Variant report

Variant	rs73302913
Chromosome Location	chr14:71945859-71945860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10141864	0.81[AFR][1000 genomes]
rs10141975	0.81[AFR][1000 genomes]
rs61419469	0.95[AFR][1000 genomes]
rs61586684	0.82[AFR][1000 genomes]
rs7151209	0.82[AFR][1000 genomes]
rs7159161	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498021	chr14:71874708-72128721	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3398985	chr14:71927884-72404676	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71929200-71964200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
2	chr14:71930200-71954200	Weak transcription	Gastric	stomach
3	chr14:71930200-71955600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr14:71931200-71948800	Weak transcription	Aorta	Aorta
5	chr14:71934400-71946400	Weak transcription	Adipose Nuclei	Adipose
6	chr14:71935400-71980400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr14:71936400-71951400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr14:71939000-71950400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:71939000-71959800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr14:71939200-71955800	Weak transcription	NHLF	lung
11	chr14:71939800-71954200	Weak transcription	Small Intestine	intestine
12	chr14:71941200-71947800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr14:71941200-71948800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:71941200-71950400	Weak transcription	Spleen	Spleen
15	chr14:71941200-71950600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:71941200-71954200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:71941200-71954400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr14:71941400-71954200	Weak transcription	HMEC	breast
19	chr14:71941400-71954600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr14:71941600-71950200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr14:71941600-71954600	Weak transcription	Stomach Smooth Muscle	stomach
22	chr14:71941600-71955400	Weak transcription	HSMMtube	muscle
23	chr14:71942000-71954600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr14:71942000-71964200	Weak transcription	Hela-S3	cervix
25	chr14:71942600-71947400	Weak transcription	Brain Substantia Nigra	brain
26	chr14:71943000-71955400	Weak transcription	HSMM	muscle
27	chr14:71943200-71948800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:71943200-71950400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr14:71944200-71946000	Enhancers	Dnd41	blood
30	chr14:71944400-71946000	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr14:71944600-71946000	Enhancers	Primary T cells from cord blood	blood
32	chr14:71944800-71946000	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr14:71944800-71946000	Enhancers	Brain Angular Gyrus	brain
34	chr14:71944800-71947800	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr14:71945200-71946000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr14:71945200-71946000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr14:71945200-71946000	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
38	chr14:71945200-71946200	Enhancers	Primary hematopoietic stem cells	blood
39	chr14:71945200-71946200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr14:71945200-71948800	Weak transcription	Fetal Intestine Small	intestine
41	chr14:71945400-71946000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr14:71945400-71946000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr14:71945400-71946000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
44	chr14:71945400-71946000	Enhancers	Brain Anterior Caudate	brain
45	chr14:71945400-71946000	Enhancers	Brain Cingulate Gyrus	brain
46	chr14:71945400-71946000	Enhancers	Brain Hippocampus Middle	brain
47	chr14:71945400-71946000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr14:71945400-71946000	Enhancers	Fetal Muscle Leg	muscle
49	chr14:71945400-71946000	Enhancers	Fetal Stomach	stomach
50	chr14:71945400-71946000	Enhancers	NHDF-Ad	bronchial

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