Variant report

Variant	rs71486113
Chromosome Location	chr10:98923721-98923722
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:98920381..98922540-chr10:98922773..98924441,2	K562	blood:
2	chr10:98923298..98925502-chr10:98954215..98957162,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1546047	1.00[ASN][1000 genomes]
rs2636770	1.00[ASN][1000 genomes]
rs2817680	1.00[ASN][1000 genomes]
rs33970910	1.00[ASN][1000 genomes]
rs34256921	1.00[ASN][1000 genomes]
rs34707456	1.00[ASN][1000 genomes]
rs35064006	1.00[ASN][1000 genomes]
rs35181240	1.00[ASN][1000 genomes]
rs35561336	1.00[ASN][1000 genomes]
rs41284256	1.00[ASN][1000 genomes]
rs59838893	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv7506	chr10:98902440-98940209	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98919600-98923800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr10:98922400-98924200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr10:98922400-98924200	Enhancers	Thymus	Thymus
4	chr10:98922600-98924200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr10:98922600-98924600	Enhancers	Fetal Muscle Leg	muscle
6	chr10:98922600-98925000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
7	chr10:98922600-98925400	Genic enhancers	Brain Germinal Matrix	brain
8	chr10:98922600-98925800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:98922800-98924000	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
10	chr10:98922800-98924400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr10:98922800-98924400	Enhancers	Fetal Brain Male	brain
12	chr10:98922800-98925600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr10:98923000-98924400	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr10:98923000-98924600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:98923000-98925400	Enhancers	Fetal Brain Female	brain
16	chr10:98923200-98923800	Active TSS	Pancreas	Pancrea
17	chr10:98923200-98924400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:98923400-98923800	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr10:98923400-98923800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
20	chr10:98923400-98924200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:98923400-98928600	Enhancers	Fetal Lung	lung
22	chr10:98923400-98939200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:98923600-98924000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr10:98923600-98924400	Bivalent Enhancer	Fetal Stomach	stomach

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