Variant report

Variant	rs34707456
Chromosome Location	chr10:98797647-98797648
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:98797086..98797680-chr21:40592225..40593135,2	MCF-7	breast:
2	chr10:98290286..98292341-chr10:98797201..98799165,2	K562	blood:
3	chr10:98796702..98797781-chr10:98876858..98877776,6	MCF-7	breast:
4	chr10:98797214..98797746-chr10:98876875..98877694,2	K562	blood:
5	chr10:98797198..98797736-chr10:98827543..98828386,2	MCF-7	breast:
6	chr10:98797178..98797761-chr10:98970351..98971056,2	MCF-7	breast:
7	chr10:98795681..98797860-chr10:98798742..98801643,2	K562	blood:
8	chr10:98790200..98791769-chr10:98796647..98799278,2	K562	blood:
9	chr10:98796818..98797761-chr10:98969942..98970829,2	K562	blood:

No data

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1546047	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636770	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817680	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33970910	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34256921	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35064006	1.00[ASN][1000 genomes]
rs35181240	1.00[ASN][1000 genomes]
rs35561336	1.00[ASN][1000 genomes]
rs41284256	0.82[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59838893	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71486113	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1037576	chr10:98791099-98873649	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895912	chr10:98794615-98838694	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98792800-98803000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:98793000-98810600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:98797000-98798000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:98797000-98798000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:98797000-98798000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:98797000-98798000	Active TSS	Duodenum Smooth Muscle	Duodenum
7	chr10:98797000-98798000	Enhancers	Fetal Intestine Large	intestine
8	chr10:98797000-98798000	Enhancers	Fetal Intestine Small	intestine
9	chr10:98797000-98798000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr10:98797000-98798200	Enhancers	Lung	lung
11	chr10:98797000-98798200	Enhancers	Spleen	Spleen
12	chr10:98797200-98797800	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:98797200-98797800	Active TSS	Primary B cells from cord blood	blood
14	chr10:98797200-98797800	Flanking Active TSS	Primary B cells from peripheral blood	blood
15	chr10:98797200-98797800	Active TSS	Primary T cells from cord blood	blood
16	chr10:98797200-98797800	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
17	chr10:98797200-98797800	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr10:98797200-98797800	Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr10:98797200-98797800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
20	chr10:98797200-98797800	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr10:98797200-98797800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:98797200-98797800	Active TSS	Primary T killer memory cells from peripheral blood	blood
23	chr10:98797200-98797800	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
24	chr10:98797200-98797800	Flanking Active TSS	Adipose Nuclei	Adipose
25	chr10:98797200-98797800	Flanking Active TSS	Liver	Liver
26	chr10:98797200-98797800	Flanking Active TSS	Brain Angular Gyrus	brain
27	chr10:98797200-98797800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
28	chr10:98797200-98797800	Active TSS	Pancreatic Islets	Pancreatic Islet
29	chr10:98797200-98797800	Flanking Active TSS	Fetal Muscle Trunk	muscle
30	chr10:98797200-98797800	Flanking Active TSS	Fetal Muscle Leg	muscle
31	chr10:98797200-98797800	Flanking Bivalent TSS/Enh	Placenta	Placenta
32	chr10:98797200-98797800	Flanking Active TSS	Ovary	ovary
33	chr10:98797200-98797800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
34	chr10:98797200-98797800	Active TSS	Rectal Smooth Muscle	rectum
35	chr10:98797200-98797800	Flanking Active TSS	Right Atrium	heart
36	chr10:98797200-98797800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
37	chr10:98797200-98797800	Flanking Active TSS	GM12878-XiMat	blood
38	chr10:98797200-98797800	Flanking Active TSS	NHLF	lung
39	chr10:98797200-98797800	Flanking Active TSS	Osteobl	bone
40	chr10:98797200-98798000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr10:98797200-98798000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
42	chr10:98797200-98798000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
43	chr10:98797200-98798000	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin02	Skin
44	chr10:98797200-98798000	Flanking Active TSS	Brain Anterior Caudate	brain
45	chr10:98797200-98798000	Flanking Active TSS	Brain Substantia Nigra	brain
46	chr10:98797200-98798000	Flanking Active TSS	Duodenum Mucosa	Duodenum
47	chr10:98797200-98798000	Active TSS	Gastric	stomach
48	chr10:98797200-98798000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
49	chr10:98797200-98798000	Flanking Active TSS	Hela-S3	cervix
50	chr10:98797400-98797800	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell

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