Variant report

Variant	rs2817680
Chromosome Location	chr10:98800369-98800370
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:98794544..98796679-chr10:98798007..98800801,2	MCF-7	breast:
2	chr10:98795681..98797860-chr10:98798742..98801643,2	K562	blood:
3	chr10:98798423..98800603-chr10:98804421..98806912,2	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1546047	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636770	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33970910	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34256921	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34707456	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35064006	1.00[ASN][1000 genomes]
rs35181240	1.00[ASN][1000 genomes]
rs35561336	1.00[ASN][1000 genomes]
rs41284256	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59838893	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71486113	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1037576	chr10:98791099-98873649	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895912	chr10:98794615-98838694	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98792800-98803000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr10:98793000-98810600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:98797800-98807600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:98797800-98830800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr10:98798000-98800600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:98798000-98810000	Weak transcription	Right Atrium	heart
7	chr10:98798000-98811200	Strong transcription	Fetal Thymus	thymus
8	chr10:98798000-98818000	Weak transcription	Brain Angular Gyrus	brain
9	chr10:98798000-98818000	Weak transcription	Brain Anterior Caudate	brain
10	chr10:98798200-98806600	Weak transcription	Fetal Brain Male	brain
11	chr10:98798200-98809800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr10:98798200-98812600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr10:98798200-98819200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr10:98798400-98802000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr10:98798600-98802200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:98798600-98807800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:98798800-98806800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr10:98799000-98800400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:98799200-98800400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr10:98799400-98809400	Strong transcription	Brain Germinal Matrix	brain
21	chr10:98799600-98806000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:98799800-98802600	Weak transcription	Thymus	Thymus
23	chr10:98800000-98801800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:98800200-98802000	Weak transcription	Fetal Brain Female	brain

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