Variant report

Variant	rs33970910
Chromosome Location	chr10:98820528-98820529
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1546047	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2636770	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2817680	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34256921	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34707456	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35064006	1.00[ASN][1000 genomes]
rs35181240	1.00[ASN][1000 genomes]
rs35561336	1.00[ASN][1000 genomes]
rs41284256	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59838893	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71486113	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1052931	chr10:98676192-98862301	Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv1042398	chr10:98691406-98851346	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv1037576	chr10:98791099-98873649	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv895912	chr10:98794615-98838694	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1039568	chr10:98800844-98868329	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1040262	chr10:98805336-98872134	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98797800-98830800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:98812600-98826600	Strong transcription	Fetal Thymus	thymus
3	chr10:98813400-98826400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr10:98816200-98820800	Enhancers	Fetal Brain Male	brain
5	chr10:98818800-98823200	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr10:98818800-98824000	Weak transcription	Brain Hippocampus Middle	brain
7	chr10:98819000-98823400	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:98819000-98824200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:98819000-98826800	Weak transcription	Brain Angular Gyrus	brain
10	chr10:98819400-98822000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr10:98819400-98838400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr10:98819800-98820600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:98819800-98822000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr10:98819800-98822000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:98819800-98826200	Weak transcription	Brain Anterior Caudate	brain
16	chr10:98820000-98822200	Weak transcription	Fetal Brain Female	brain
17	chr10:98820000-98822400	Weak transcription	Brain Germinal Matrix	brain
18	chr10:98820400-98820600	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:98820400-98822000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr10:98820400-98829400	Weak transcription	Thymus	Thymus

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