Variant report

Variant	rs71560864
Chromosome Location	chr6:54672307-54672308
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13191783	1.00[AMR][1000 genomes]
rs13201525	1.00[AMR][1000 genomes]
rs13203892	1.00[AMR][1000 genomes]
rs13204748	1.00[AMR][1000 genomes]
rs13207382	1.00[AMR][1000 genomes]
rs13208146	1.00[AMR][1000 genomes]
rs13210210	1.00[AMR][1000 genomes]
rs34015457	1.00[AMR][1000 genomes]
rs34327080	1.00[AMR][1000 genomes]
rs35071440	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35234792	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35326632	1.00[AMR][1000 genomes]
rs35908115	1.00[AMR][1000 genomes]
rs71560876	1.00[AMR][1000 genomes]
rs71560878	1.00[AMR][1000 genomes]
rs71560879	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54669800-54673400	Weak transcription	Fetal Intestine Large	intestine
2	chr6:54670600-54674000	Weak transcription	Fetal Heart	heart
3	chr6:54670800-54673400	Weak transcription	Fetal Intestine Small	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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