Variant report

Variant	rs34015457
Chromosome Location	chr6:54714371-54714372
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54692819..54694720-chr6:54713504..54715357,2	MCF-7	breast:
2	chr6:54712764..54715534-chr6:54774311..54776470,2	MCF-7	breast:
3	chr6:54713425..54714965-chr6:54753003..54756000,2	MCF-7	breast:
4	chr6:54711853..54714484-chr8:48522444..48524308,2	MCF-7	breast:
5	chr6:54462717..54465444-chr6:54712732..54714446,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs13191783	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13192880	0.87[EUR][1000 genomes]
rs13196537	0.87[EUR][1000 genomes]
rs13200567	1.00[EUR][1000 genomes]
rs13201525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13203892	1.00[AMR][1000 genomes]
rs13204748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13207382	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13208146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13210210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13211183	1.00[EUR][1000 genomes]
rs13218015	1.00[EUR][1000 genomes]
rs34202476	1.00[EUR][1000 genomes]
rs34321112	1.00[EUR][1000 genomes]
rs34327080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34841798	1.00[EUR][1000 genomes]
rs34896294	1.00[EUR][1000 genomes]
rs34920015	1.00[EUR][1000 genomes]
rs34950463	1.00[EUR][1000 genomes]
rs35071440	1.00[AMR][1000 genomes]
rs35081106	1.00[EUR][1000 genomes]
rs35124020	0.87[EUR][1000 genomes]
rs35253545	1.00[EUR][1000 genomes]
rs35326632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35729004	1.00[EUR][1000 genomes]
rs35908115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35925278	0.87[EUR][1000 genomes]
rs36030916	1.00[EUR][1000 genomes]
rs36062413	1.00[EUR][1000 genomes]
rs36115210	1.00[EUR][1000 genomes]
rs71560864	1.00[AMR][1000 genomes]
rs71560876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71560878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71560879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71560885	1.00[EUR][1000 genomes]
rs71560887	0.86[EUR][1000 genomes]
rs7747706	1.00[EUR][1000 genomes]
rs7767204	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54710800-54714400	Active TSS	Colonic Mucosa	Colon
2	chr6:54712200-54714400	Flanking Active TSS	Hela-S3	cervix
3	chr6:54712600-54725000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr6:54712800-54714400	Enhancers	Placenta Amnion	Placenta Amnion
5	chr6:54712800-54716800	Weak transcription	Fetal Heart	heart
6	chr6:54713000-54714600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:54713200-54714400	Weak transcription	Fetal Intestine Large	intestine
8	chr6:54713200-54715000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr6:54713200-54718200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr6:54713200-54720800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr6:54713200-54721000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
12	chr6:54713200-54725600	Weak transcription	Gastric	stomach
13	chr6:54713400-54720800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr6:54713400-54720800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr6:54713400-54726400	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr6:54713600-54714600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:54713600-54714600	Flanking Active TSS	HMEC	breast
18	chr6:54713800-54714400	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:54713800-54714400	Enhancers	Placenta	Placenta
20	chr6:54713800-54714400	Enhancers	Pancreas	Pancrea
21	chr6:54713800-54714400	Transcr. at gene 5' and 3'	NHEK	skin
22	chr6:54714000-54714400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr6:54714000-54714400	Enhancers	Esophagus	oesophagus
24	chr6:54714000-54714400	Enhancers	Psoas Muscle	Psoas
25	chr6:54714000-54714800	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr6:54714200-54714400	Bivalent Enhancer	Left Ventricle	heart
27	chr6:54714200-54714400	Enhancers	Right Atrium	heart
28	chr6:54714200-54714600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr6:54714200-54714600	Flanking Active TSS	Duodenum Mucosa	Duodenum
30	chr6:54714200-54715000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr6:54714200-54715000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr6:54714200-54715000	Weak transcription	Fetal Intestine Small	intestine

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