Variant report

Variant	rs13196537
Chromosome Location	chr6:54850967-54850968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs13191783	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13192880	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13200567	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13201525	0.87[EUR][1000 genomes]
rs13202991	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13203892	1.00[CEU][hapmap];0.85[AFR][1000 genomes]
rs13204748	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13205172	1.00[CEU][hapmap]
rs13207382	1.00[CEU][hapmap];0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13208146	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13210210	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13211183	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs13218015	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34015457	0.87[EUR][1000 genomes]
rs34187954	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34202476	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34321112	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34327080	0.87[EUR][1000 genomes]
rs34491203	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34602564	0.87[EUR][1000 genomes]
rs34841798	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34896294	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34920015	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34950463	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35081106	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35094736	0.87[EUR][1000 genomes]
rs35253545	0.87[EUR][1000 genomes]
rs35326632	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35729004	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35908115	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs35925278	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36030916	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36062413	0.87[EUR][1000 genomes]
rs36115210	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4524608	0.87[EUR][1000 genomes]
rs71560876	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs71560878	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs71560879	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs71560885	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71560895	0.87[EUR][1000 genomes]
rs7747706	0.87[EUR][1000 genomes]
rs7767204	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv5309	chr6:54834971-54855729	Enhancers Active TSS Flanking Active TSS Weak transcription	n/a	n/a	inside rSNPs	diseases
3	nsv603134	chr6:54841672-54851340	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
4	esv20291	chr6:54846098-54851665	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
5	esv3474002	chr6:54846245-54851547	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
6	esv3474003	chr6:54846291-54851530	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
7	esv3474001	chr6:54846368-54851443	Weak transcription Enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
8	nsv499725	chr6:54846381-54851446	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
9	esv3474004	chr6:54846382-54851446	Enhancers Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
10	nsv603139	chr6:54848142-54851038	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	nsv603140	chr6:54848142-54851340	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
12	nsv603141	chr6:54848142-54852462	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
13	nsv603145	chr6:54848265-54850977	Weak transcription	n/a	n/a	inside rSNPs	diseases
14	nsv603146	chr6:54848265-54851340	Weak transcription	n/a	n/a	inside rSNPs	diseases
15	nsv603147	chr6:54848265-54852462	Weak transcription	n/a	n/a	inside rSNPs	diseases
16	nsv603150	chr6:54848317-54851038	Weak transcription	n/a	n/a	inside rSNPs	diseases
17	nsv603151	chr6:54848317-54851340	Weak transcription	n/a	n/a	inside rSNPs	diseases
18	nsv603155	chr6:54848414-54850977	Weak transcription	n/a	n/a	inside rSNPs	diseases
19	nsv603156	chr6:54848414-54851340	Weak transcription	n/a	n/a	inside rSNPs	diseases
20	nsv603158	chr6:54848810-54851340	Weak transcription	n/a	n/a	inside rSNPs	diseases
21	nsv603159	chr6:54849019-54850977	Weak transcription	n/a	n/a	inside rSNPs	diseases
22	nsv603160	chr6:54849161-54851340	Weak transcription	n/a	n/a	inside rSNPs	diseases
23	nsv603161	chr6:54849271-54851340	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54847000-54854800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:54847000-54856800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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