Variant report

Variant	rs34187954
Chromosome Location	chr6:54965135-54965136
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs13191783	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13192880	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13196537	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13200567	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13201525	1.00[EUR][1000 genomes]
rs13202991	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13203892	1.00[AFR][1000 genomes]
rs13204748	1.00[EUR][1000 genomes]
rs13207382	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13208146	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13211183	1.00[EUR][1000 genomes]
rs13218015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34202476	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34267888	0.86[EUR][1000 genomes]
rs34321112	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34327080	1.00[EUR][1000 genomes]
rs34491203	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34602564	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34841798	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34896294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34920015	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34950463	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35081106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35094736	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35124020	0.87[EUR][1000 genomes]
rs35253545	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35326632	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35729004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35908115	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35925278	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs36030916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36062413	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36115210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4524608	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71560876	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71560878	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71560879	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71560885	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71560887	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71560895	1.00[EUR][1000 genomes]
rs71560900	0.86[EUR][1000 genomes]
rs71560901	0.86[EUR][1000 genomes]
rs7747706	1.00[EUR][1000 genomes]
rs7767204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54963600-54965200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:54964200-54965400	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr6:54964200-54965800	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr6:54964400-54965400	Enhancers	H9 Cell Line	embryonic stem cell
5	chr6:54964400-54965600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr6:54964600-54973000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr6:54964800-54965200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr6:54965000-54971000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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