Variant report

Variant	rs35124020
Chromosome Location	chr6:54788725-54788726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs13191783	0.87[EUR][1000 genomes]
rs13200567	0.87[EUR][1000 genomes]
rs13201525	0.87[EUR][1000 genomes]
rs13202991	0.87[EUR][1000 genomes]
rs13204748	0.87[EUR][1000 genomes]
rs13207382	0.87[EUR][1000 genomes]
rs13208146	0.87[EUR][1000 genomes]
rs13210210	0.87[EUR][1000 genomes]
rs13211183	0.87[EUR][1000 genomes]
rs13218015	0.87[EUR][1000 genomes]
rs34015457	0.87[EUR][1000 genomes]
rs34187954	0.87[EUR][1000 genomes]
rs34202476	0.87[EUR][1000 genomes]
rs34321112	0.87[EUR][1000 genomes]
rs34327080	0.87[EUR][1000 genomes]
rs34602564	0.87[EUR][1000 genomes]
rs34841798	0.87[EUR][1000 genomes]
rs34896294	0.87[EUR][1000 genomes]
rs34920015	0.87[EUR][1000 genomes]
rs34950463	0.87[EUR][1000 genomes]
rs35081106	0.87[EUR][1000 genomes]
rs35094736	0.87[EUR][1000 genomes]
rs35253545	0.87[EUR][1000 genomes]
rs35326632	0.87[EUR][1000 genomes]
rs35729004	0.87[EUR][1000 genomes]
rs35908115	0.87[EUR][1000 genomes]
rs36030916	0.87[EUR][1000 genomes]
rs36062413	0.87[EUR][1000 genomes]
rs36115210	0.87[EUR][1000 genomes]
rs4524608	0.87[EUR][1000 genomes]
rs71560876	0.87[EUR][1000 genomes]
rs71560878	0.87[EUR][1000 genomes]
rs71560879	0.87[EUR][1000 genomes]
rs71560885	0.87[EUR][1000 genomes]
rs7747706	0.87[EUR][1000 genomes]
rs7767204	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54776000-54796800	Weak transcription	Fetal Intestine Small	intestine
2	chr6:54781800-54796800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:54782200-54791400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:54782200-54792200	Weak transcription	NHEK	skin
5	chr6:54782200-54792400	Weak transcription	HMEC	breast
6	chr6:54782200-54792600	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr6:54785600-54805000	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr6:54786600-54790000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr6:54786800-54800000	Weak transcription	Hela-S3	cervix
10	chr6:54788200-54793600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:54788600-54789200	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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