Variant report

Variant	rs13210210
Chromosome Location	chr6:54743247-54743248
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:54704497..54716767-chr6:54728797..54750947,71	MCF-7	breast:
2	chr6:54586929..54589873-chr6:54742420..54744071,2	MCF-7	breast:
3	chr6:54582713..54585752-chr6:54741876..54745709,4	MCF-7	breast:
4	chr6:54741459..54745147-chr6:54761074..54763520,3	MCF-7	breast:
5	chr6:54736804..54741584-chr6:54742863..54746409,5	MCF-7	breast:
6	chr6:54742187..54744014-chr6:54753985..54756805,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000224984	Chromatin interaction
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13191783	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13192880	0.87[EUR][1000 genomes]
rs13196537	0.87[EUR][1000 genomes]
rs13200567	1.00[EUR][1000 genomes]
rs13201525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13202991	1.00[EUR][1000 genomes]
rs13203892	1.00[CEU][hapmap];1.00[AMR][1000 genomes]
rs13204748	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13207382	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13208146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13211183	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13218015	1.00[EUR][1000 genomes]
rs34015457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34202476	1.00[EUR][1000 genomes]
rs34321112	1.00[EUR][1000 genomes]
rs34327080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34841798	1.00[EUR][1000 genomes]
rs34896294	1.00[EUR][1000 genomes]
rs34920015	1.00[EUR][1000 genomes]
rs34950463	1.00[EUR][1000 genomes]
rs35071440	1.00[AMR][1000 genomes]
rs35081106	1.00[EUR][1000 genomes]
rs35124020	0.87[EUR][1000 genomes]
rs35253545	1.00[EUR][1000 genomes]
rs35326632	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35729004	1.00[EUR][1000 genomes]
rs35908115	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35925278	0.87[EUR][1000 genomes]
rs36030916	1.00[EUR][1000 genomes]
rs36062413	1.00[EUR][1000 genomes]
rs36115210	1.00[EUR][1000 genomes]
rs71560864	1.00[AMR][1000 genomes]
rs71560876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71560878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71560879	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71560885	1.00[EUR][1000 genomes]
rs71560887	0.86[EUR][1000 genomes]
rs7747706	1.00[EUR][1000 genomes]
rs7767204	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54727200-54748800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:54727400-54743800	Weak transcription	Pancreas	Pancrea
3	chr6:54730400-54743800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr6:54737200-54746400	Enhancers	Hela-S3	cervix
5	chr6:54737600-54755800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:54739800-54763000	Weak transcription	Small Intestine	intestine
7	chr6:54741600-54744600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr6:54741800-54743600	Enhancers	Placenta Amnion	Placenta Amnion
9	chr6:54741800-54744800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:54741800-54744800	Enhancers	Fetal Intestine Large	intestine
11	chr6:54742000-54744200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:54742000-54744400	Enhancers	Duodenum Mucosa	Duodenum
13	chr6:54742400-54744600	Enhancers	Fetal Intestine Small	intestine
14	chr6:54742400-54744800	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr6:54742600-54744600	Enhancers	Stomach Mucosa	stomach
16	chr6:54742600-54745200	Enhancers	HMEC	breast
17	chr6:54742800-54743400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr6:54743000-54744000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr6:54743000-54752000	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr6:54743200-54744200	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr6:54743200-54744200	Genic enhancers	NHEK	skin
22	chr6:54743200-54744400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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