Variant report

Variant	rs71560887
Chromosome Location	chr6:54888836-54888837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs13191783	0.86[EUR][1000 genomes]
rs13199854	0.81[AFR][1000 genomes]
rs13200567	0.86[EUR][1000 genomes]
rs13201525	0.86[EUR][1000 genomes]
rs13202991	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13204748	0.86[EUR][1000 genomes]
rs13207382	0.86[EUR][1000 genomes]
rs13208146	0.86[EUR][1000 genomes]
rs13210210	0.86[EUR][1000 genomes]
rs13211183	0.86[EUR][1000 genomes]
rs13218015	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34015457	0.86[EUR][1000 genomes]
rs34187954	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34202476	0.86[EUR][1000 genomes]
rs34321112	0.86[EUR][1000 genomes]
rs34327080	0.86[EUR][1000 genomes]
rs34491203	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34602564	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34841798	0.86[EUR][1000 genomes]
rs34896294	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34920015	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34950463	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35081106	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35094736	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35253545	0.86[EUR][1000 genomes]
rs35326632	0.86[EUR][1000 genomes]
rs35729004	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35908115	0.86[EUR][1000 genomes]
rs36030916	0.86[EUR][1000 genomes]
rs36062413	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36115210	0.86[EUR][1000 genomes]
rs4524608	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71560876	0.86[EUR][1000 genomes]
rs71560878	0.86[EUR][1000 genomes]
rs71560879	0.86[EUR][1000 genomes]
rs71560885	0.86[EUR][1000 genomes]
rs71560895	0.86[EUR][1000 genomes]
rs7747706	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7767204	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3364886	chr6:54880042-54912395	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
2	esv3368520	chr6:54881042-54905736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv1033756	chr6:54881828-54944304	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538225	chr6:54881828-54944304	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54887400-54889800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr6:54887600-54889400	Enhancers	Monocytes-CD14+_RO01746	blood
3	chr6:54888200-54889400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr6:54888400-54889400	Enhancers	Primary hematopoietic stem cells	blood

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