Variant report
Variant | rs13200567 |
---|---|
Chromosome Location | chr6:54852008-54852009 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs13191783 | 1.00[EUR][1000 genomes] |
rs13192880 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs13196537 | 1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs13201525 | 1.00[EUR][1000 genomes] |
rs13202991 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs13204748 | 1.00[EUR][1000 genomes] |
rs13207382 | 1.00[EUR][1000 genomes] |
rs13208146 | 1.00[EUR][1000 genomes] |
rs13210210 | 1.00[EUR][1000 genomes] |
rs13211183 | 1.00[EUR][1000 genomes] |
rs13218015 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34015457 | 1.00[EUR][1000 genomes] |
rs34187954 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34202476 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34321112 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34327080 | 1.00[EUR][1000 genomes] |
rs34491203 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34602564 | 1.00[EUR][1000 genomes] |
rs34841798 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34896294 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34920015 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs34950463 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35081106 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35094736 | 1.00[EUR][1000 genomes] |
rs35124020 | 0.87[EUR][1000 genomes] |
rs35253545 | 1.00[EUR][1000 genomes] |
rs35326632 | 1.00[EUR][1000 genomes] |
rs35729004 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs35908115 | 1.00[EUR][1000 genomes] |
rs35925278 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs36030916 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs36062413 | 1.00[EUR][1000 genomes] |
rs36115210 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs4524608 | 1.00[EUR][1000 genomes] |
rs71560876 | 1.00[EUR][1000 genomes] |
rs71560878 | 1.00[EUR][1000 genomes] |
rs71560879 | 1.00[EUR][1000 genomes] |
rs71560885 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs71560887 | 0.86[EUR][1000 genomes] |
rs71560895 | 1.00[EUR][1000 genomes] |
rs7747706 | 1.00[EUR][1000 genomes] |
rs7767204 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv885900 | chr6:54517968-54852462 | Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
2 | nsv5309 | chr6:54834971-54855729 | Enhancers Active TSS Flanking Active TSS Weak transcription | n/a | n/a | inside rSNPs | diseases |
3 | nsv603141 | chr6:54848142-54852462 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | diseases |
4 | nsv603147 | chr6:54848265-54852462 | Weak transcription | n/a | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:54847000-54854800 | Weak transcription | IMR90 fetal lung fibroblasts Cell Line | lung |
2 | chr6:54847000-54856800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |