Variant report

Variant	rs13191783
Chromosome Location	chr6:54816348-54816349
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:54711449..54713665-chr6:54815278..54817659,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168143	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs13192880	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13196537	0.85[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs13200567	1.00[EUR][1000 genomes]
rs13201525	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13202991	1.00[EUR][1000 genomes]
rs13203892	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13204748	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13207382	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13208146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13210210	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13211183	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs13218015	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34015457	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34187954	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34202476	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34321112	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34327080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34491203	1.00[EUR][1000 genomes]
rs34602564	1.00[EUR][1000 genomes]
rs34841798	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34896294	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34920015	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34950463	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35081106	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35094736	1.00[EUR][1000 genomes]
rs35124020	0.87[EUR][1000 genomes]
rs35253545	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35326632	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35729004	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs35908115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35925278	0.87[EUR][1000 genomes]
rs36030916	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs36062413	1.00[EUR][1000 genomes]
rs36115210	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4524608	1.00[EUR][1000 genomes]
rs71560864	1.00[AMR][1000 genomes]
rs71560876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71560878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71560879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71560885	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs71560887	0.86[EUR][1000 genomes]
rs71560895	1.00[EUR][1000 genomes]
rs7747706	1.00[EUR][1000 genomes]
rs7767204	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885900	chr6:54517968-54852462	Active TSS Bivalent Enhancer Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2763553	chr6:54687979-54820487	Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:54807400-54818000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:54809400-54817600	Weak transcription	HMEC	breast

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