Variant report

Variant	rs71560900
Chromosome Location	chr6:55040266-55040267
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:55032640..55035251-chr6:55040019..55043555,3	MCF-7	breast:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13202991	0.86[EUR][1000 genomes]
rs13218015	0.86[EUR][1000 genomes]
rs34187954	0.86[EUR][1000 genomes]
rs34267888	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs34321112	0.86[EUR][1000 genomes]
rs34491203	0.86[EUR][1000 genomes]
rs34602564	0.86[EUR][1000 genomes]
rs34841798	0.86[EUR][1000 genomes]
rs34896294	0.86[EUR][1000 genomes]
rs34920015	0.86[EUR][1000 genomes]
rs34950463	0.86[EUR][1000 genomes]
rs35081106	0.86[EUR][1000 genomes]
rs35094736	0.86[EUR][1000 genomes]
rs35729004	0.86[EUR][1000 genomes]
rs36062413	0.86[EUR][1000 genomes]
rs36115210	0.86[EUR][1000 genomes]
rs4524608	0.86[EUR][1000 genomes]
rs71560885	0.86[EUR][1000 genomes]
rs71560895	0.86[EUR][1000 genomes]
rs71560901	1.00[EUR][1000 genomes]
rs7747706	0.86[EUR][1000 genomes]
rs7767204	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016461	chr6:55038131-55129663	Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:55039000-55040400	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
2	chr6:55039000-55040400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
3	chr6:55039000-55040600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
4	chr6:55039000-55040600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
5	chr6:55039000-55040600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
6	chr6:55039000-55040600	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:55039000-55040800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
8	chr6:55039000-55040800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:55039200-55040400	Active TSS	Right Ventricle	heart
10	chr6:55039200-55040800	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
11	chr6:55039400-55040400	Bivalent Enhancer	Fetal Heart	heart
12	chr6:55039400-55040600	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:55039800-55040400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
14	chr6:55039800-55040400	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
15	chr6:55039800-55040600	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
16	chr6:55040000-55040400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr6:55040000-55040400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:55040000-55040400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr6:55040000-55040400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
20	chr6:55040000-55040400	Flanking Bivalent TSS/Enh	Fetal Brain Male	brain
21	chr6:55040000-55040600	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr6:55040000-55040600	Bivalent Enhancer	Brain Substantia Nigra	brain
23	chr6:55040000-55040800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
24	chr6:55040200-55040400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:55040200-55040400	Bivalent Enhancer	Brain Angular Gyrus	brain
26	chr6:55040200-55040400	Bivalent Enhancer	Fetal Kidney	kidney
27	chr6:55040200-55040400	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
28	chr6:55040200-55040600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr6:55040200-55040600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:55040200-55040600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
31	chr6:55040200-55040600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
32	chr6:55040200-55040600	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
33	chr6:55040200-55040800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
34	chr6:55040200-55040800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr6:55040200-55040800	Bivalent/Poised TSS	Brain Germinal Matrix	brain

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