Variant report

Variant	rs71577165
Chromosome Location	chr5:154470397-154470398
allele	-/ATA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs17116820	0.86[ASN][1000 genomes]
rs17116849	0.86[ASN][1000 genomes]
rs17116855	0.86[ASN][1000 genomes]
rs17116862	0.86[ASN][1000 genomes]
rs17116872	0.86[ASN][1000 genomes]
rs17116886	0.86[ASN][1000 genomes]
rs17116912	0.80[ASN][1000 genomes]
rs17116922	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154462200-154474400	Weak transcription	Right Ventricle	heart
2	chr5:154464000-154472000	Enhancers	Placenta	Placenta
3	chr5:154464200-154472800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr5:154467400-154470600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:154467400-154470600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:154467400-154470600	Weak transcription	HMEC	breast
7	chr5:154467400-154470600	Weak transcription	HSMMtube	muscle
8	chr5:154467400-154474800	Weak transcription	Left Ventricle	heart
9	chr5:154468200-154470600	Weak transcription	Rectal Smooth Muscle	rectum
10	chr5:154468400-154471400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr5:154468800-154470600	Weak transcription	Colon Smooth Muscle	Colon
12	chr5:154468800-154470600	Weak transcription	Fetal Stomach	stomach
13	chr5:154468800-154472000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr5:154469200-154470800	Weak transcription	Ovary	ovary
15	chr5:154469600-154470600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr5:154469600-154470600	Weak transcription	NHEK	skin
17	chr5:154469600-154471600	Weak transcription	HUVEC	blood vessel
18	chr5:154469800-154470600	Weak transcription	HSMM	muscle
19	chr5:154470200-154472000	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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