Variant report

Variant	rs17116912
Chromosome Location	chr5:154491144-154491145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10077934	0.80[ASN][1000 genomes]
rs17116820	0.93[ASN][1000 genomes]
rs17116849	0.93[ASN][1000 genomes]
rs17116855	0.93[ASN][1000 genomes]
rs17116862	0.93[ASN][1000 genomes]
rs17116872	0.93[ASN][1000 genomes]
rs17116886	0.93[ASN][1000 genomes]
rs17116922	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs66859046	0.82[ASN][1000 genomes]
rs67047831	0.82[ASN][1000 genomes]
rs6859744	0.80[ASN][1000 genomes]
rs6883288	0.80[ASN][1000 genomes]
rs71577165	0.80[ASN][1000 genomes]
rs71597682	0.82[ASN][1000 genomes]
rs7715693	0.82[ASN][1000 genomes]
rs7719709	0.82[ASN][1000 genomes]
rs7722477	0.80[ASN][1000 genomes]
rs7733613	0.80[ASN][1000 genomes]
rs7733811	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv462492	chr5:154489393-154523910	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600091	chr5:154489393-154523910	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv964966	chr5:154490951-154491821	Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154490600-154494200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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