Variant report

Variant	rs7722477
Chromosome Location	chr5:154477427-154477428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154475458..154478110-chr5:154501032..154502578,2	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10071858	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10077934	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10078853	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1025301	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13172264	0.94[ASN][1000 genomes]
rs13179975	0.88[EUR][1000 genomes]
rs17116820	0.86[ASN][1000 genomes]
rs17116849	0.86[ASN][1000 genomes]
rs17116855	0.86[ASN][1000 genomes]
rs17116862	0.86[ASN][1000 genomes]
rs17116872	0.86[ASN][1000 genomes]
rs17116886	0.86[ASN][1000 genomes]
rs17116912	0.80[ASN][1000 genomes]
rs17116922	0.80[ASN][1000 genomes]
rs286595	1.00[JPT][hapmap]
rs34974326	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs36059089	0.82[EUR][1000 genomes]
rs4958781	0.82[CEU][hapmap]
rs6580134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66691937	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs66859046	0.88[ASN][1000 genomes]
rs67047831	0.88[ASN][1000 genomes]
rs6859744	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869991	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6870353	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6883288	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71597682	0.88[ASN][1000 genomes]
rs7713042	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7715693	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7719709	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs7724975	0.82[EUR][1000 genomes]
rs7733613	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733811	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736559	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154472400-154483000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:154472800-154477600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:154475000-154477600	Weak transcription	Left Ventricle	heart
4	chr5:154476000-154477800	Weak transcription	Fetal Heart	heart
5	chr5:154476000-154477800	Weak transcription	Right Ventricle	heart

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