Variant report

Variant	rs13172264
Chromosome Location	chr5:154489683-154489684
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154485065..154487069-chr5:154488163..154490065,2	K562	blood:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10077934	0.94[ASN][1000 genomes]
rs10454998	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11167710	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12153388	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12187203	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13154769	0.81[EUR][1000 genomes]
rs13158970	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13159706	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13165083	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13167540	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13172496	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13186839	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13187205	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17116820	0.81[ASN][1000 genomes]
rs17116849	0.81[ASN][1000 genomes]
rs17116855	0.81[ASN][1000 genomes]
rs17116862	0.81[ASN][1000 genomes]
rs17116872	0.81[ASN][1000 genomes]
rs17116886	0.81[ASN][1000 genomes]
rs17650275	0.83[EUR][1000 genomes]
rs286595	1.00[JPT][hapmap]
rs34317195	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34549773	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs36059089	0.85[EUR][1000 genomes]
rs4958397	0.92[CEU][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4958778	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958781	1.00[CEU][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958782	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4958783	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66859046	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67047831	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67562605	0.82[EUR][1000 genomes]
rs6859744	0.94[ASN][1000 genomes]
rs6883288	0.94[ASN][1000 genomes]
rs71597682	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72799591	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7715693	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7719709	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7722477	0.94[ASN][1000 genomes]
rs7724975	0.85[EUR][1000 genomes]
rs7733613	0.94[ASN][1000 genomes]
rs7733811	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv462492	chr5:154489393-154523910	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv600091	chr5:154489393-154523910	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154486800-154489800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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