Variant report

Variant	rs17116886
Chromosome Location	chr5:154480415-154480416
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10077934	0.86[ASN][1000 genomes]
rs13172264	0.81[ASN][1000 genomes]
rs17116820	1.00[ASN][1000 genomes]
rs17116849	1.00[ASN][1000 genomes]
rs17116855	1.00[ASN][1000 genomes]
rs17116862	1.00[ASN][1000 genomes]
rs17116872	1.00[ASN][1000 genomes]
rs17116912	0.93[ASN][1000 genomes]
rs17116922	0.93[ASN][1000 genomes]
rs6859744	0.86[ASN][1000 genomes]
rs6883288	0.86[ASN][1000 genomes]
rs71577165	0.86[ASN][1000 genomes]
rs7722477	0.86[ASN][1000 genomes]
rs7733613	0.86[ASN][1000 genomes]
rs7733811	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154472400-154483000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:154478400-154480800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr5:154478400-154482600	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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