Variant report

Variant	rs17116862
Chromosome Location	chr5:154468863-154468864
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10077934	0.86[ASN][1000 genomes]
rs13172264	0.81[ASN][1000 genomes]
rs17116820	1.00[ASN][1000 genomes]
rs17116849	1.00[ASN][1000 genomes]
rs17116855	1.00[ASN][1000 genomes]
rs17116872	1.00[ASN][1000 genomes]
rs17116886	1.00[ASN][1000 genomes]
rs17116912	0.93[ASN][1000 genomes]
rs17116922	0.93[ASN][1000 genomes]
rs286595	1.00[JPT][hapmap]
rs6859744	0.86[ASN][1000 genomes]
rs6883288	0.86[ASN][1000 genomes]
rs71577165	0.86[ASN][1000 genomes]
rs7715693	1.00[JPT][hapmap]
rs7719709	1.00[JPT][hapmap]
rs7722477	0.86[ASN][1000 genomes]
rs7733613	0.86[ASN][1000 genomes]
rs7733811	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154462200-154474400	Weak transcription	Right Ventricle	heart
2	chr5:154464000-154472000	Enhancers	Placenta	Placenta
3	chr5:154464200-154469200	Weak transcription	HUVEC	blood vessel
4	chr5:154464200-154472800	Enhancers	Placenta Amnion	Placenta Amnion
5	chr5:154465200-154469600	Enhancers	NHEK	skin
6	chr5:154466600-154469800	Enhancers	Fetal Heart	heart
7	chr5:154467200-154469200	Enhancers	Ovary	ovary
8	chr5:154467400-154470600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr5:154467400-154470600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:154467400-154470600	Weak transcription	HMEC	breast
11	chr5:154467400-154470600	Weak transcription	HSMMtube	muscle
12	chr5:154467400-154474800	Weak transcription	Left Ventricle	heart
13	chr5:154468200-154469200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr5:154468200-154470600	Weak transcription	Rectal Smooth Muscle	rectum
15	chr5:154468400-154471400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr5:154468800-154470600	Weak transcription	Colon Smooth Muscle	Colon
17	chr5:154468800-154470600	Weak transcription	Fetal Stomach	stomach
18	chr5:154468800-154472000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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