Variant report

Variant	rs7724975
Chromosome Location	chr5:154472762-154472763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154472104..154473757-chr5:156560735..156562249,2	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10071858	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077934	0.85[EUR][1000 genomes]
rs10078853	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025301	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10454998	0.85[EUR][1000 genomes]
rs11167710	0.85[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs12153388	0.85[EUR][1000 genomes]
rs12187203	0.85[EUR][1000 genomes]
rs12187264	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13154769	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158970	0.83[EUR][1000 genomes]
rs13159706	0.85[EUR][1000 genomes]
rs13165083	0.85[EUR][1000 genomes]
rs13167540	0.85[EUR][1000 genomes]
rs13172264	0.85[EUR][1000 genomes]
rs13172496	0.85[EUR][1000 genomes]
rs13179975	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13186839	0.83[EUR][1000 genomes]
rs13187205	0.83[EUR][1000 genomes]
rs17650275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34317195	0.83[EUR][1000 genomes]
rs34549773	0.83[EUR][1000 genomes]
rs34974326	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36059089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958397	0.84[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]
rs4958778	0.85[EUR][1000 genomes]
rs4958781	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs4958782	0.85[EUR][1000 genomes]
rs4958783	0.83[EUR][1000 genomes]
rs6580134	0.82[EUR][1000 genomes]
rs66691937	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66859046	0.85[EUR][1000 genomes]
rs67047831	0.85[EUR][1000 genomes]
rs67562605	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869991	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870353	0.86[EUR][1000 genomes]
rs6883288	0.85[EUR][1000 genomes]
rs71597682	0.85[EUR][1000 genomes]
rs72799591	0.82[EUR][1000 genomes]
rs7713042	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715693	0.91[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs7719709	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs7722477	0.82[EUR][1000 genomes]
rs7733613	0.82[EUR][1000 genomes]
rs7736559	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154462200-154474400	Weak transcription	Right Ventricle	heart
2	chr5:154464200-154472800	Enhancers	Placenta Amnion	Placenta Amnion
3	chr5:154467400-154474800	Weak transcription	Left Ventricle	heart
4	chr5:154470600-154472800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:154470600-154473000	Enhancers	HSMMtube	muscle
6	chr5:154471600-154474400	Weak transcription	Ovary	ovary
7	chr5:154472000-154474000	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:154472400-154473600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:154472400-154483000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:154472600-154476000	Enhancers	Fetal Heart	heart

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