Variant report

Variant	rs34974326
Chromosome Location	chr5:154466281-154466282
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154460850..154462591-chr5:154465930..154468582,2	MCF-7	breast:
2	chr5:154461655..154463919-chr5:154465276..154468165,3	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10071858	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077934	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10078853	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025301	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187264	0.85[EUR][1000 genomes]
rs13154769	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179975	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17650275	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36059089	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580134	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66691937	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67562605	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859744	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6869991	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870353	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6883288	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7713042	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722477	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7724975	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733613	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7733811	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7736559	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154461000-154466600	Weak transcription	Fetal Heart	heart
2	chr5:154462200-154474400	Weak transcription	Right Ventricle	heart
3	chr5:154462400-154466600	Weak transcription	HSMMtube	muscle
4	chr5:154462800-154468000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:154464000-154467400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr5:154464000-154467400	Enhancers	HMEC	breast
7	chr5:154464000-154468200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:154464000-154472000	Enhancers	Placenta	Placenta
9	chr5:154464200-154469200	Weak transcription	HUVEC	blood vessel
10	chr5:154464200-154472800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr5:154464400-154467400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr5:154464600-154468800	Enhancers	Fetal Stomach	stomach
13	chr5:154464800-154468400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr5:154465200-154469600	Enhancers	NHEK	skin

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