Variant report

Variant	rs10078853
Chromosome Location	chr5:154474997-154474998
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10071858	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077934	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1025301	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187264	0.83[EUR][1000 genomes]
rs13154769	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13179975	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17650275	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34974326	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36059089	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580134	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs66691937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67562605	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6859744	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6869991	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870353	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6883288	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7713042	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7722477	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7724975	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7733613	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7733811	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7736559	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154472400-154483000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:154472600-154476000	Enhancers	Fetal Heart	heart
3	chr5:154472800-154477600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr5:154474400-154475000	Enhancers	Right Ventricle	heart
5	chr5:154474800-154475000	Enhancers	Left Ventricle	heart

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