Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10071858	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077934	0.88[EUR][1000 genomes]
rs10078853	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025301	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11167710	1.00[CHB][hapmap]
rs13154769	1.00[ASN][1000 genomes]
rs13179975	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17650275	1.00[ASN][1000 genomes]
rs34974326	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36059089	1.00[ASN][1000 genomes]
rs4958397	1.00[CHB][hapmap]
rs4958781	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs6580134	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs66691937	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67562605	1.00[ASN][1000 genomes]
rs6859744	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6869991	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870353	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6883288	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7713042	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715693	0.83[CEU][hapmap]
rs7719709	0.83[CEU][hapmap]
rs7722477	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7724975	1.00[ASN][1000 genomes]
rs7733613	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7733811	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154482600-154483200	Enhancers	Fetal Heart	heart
2	chr5:154482800-154484000	Enhancers	NHEK	skin
3	chr5:154483000-154483200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:154483000-154483200	Enhancers	HMEC	breast
5	chr5:154483000-154484000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:154483000-154485800	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr5:154483000-154486600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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