Variant report

Variant	rs67562605
Chromosome Location	chr5:154468005-154468006
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:154460850..154462591-chr5:154465930..154468582,2	MCF-7	breast:
2	chr5:154461655..154463919-chr5:154465276..154468165,3	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10071858	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077934	0.84[EUR][1000 genomes]
rs10078853	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025301	1.00[ASN][1000 genomes]
rs10454998	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs11167710	0.80[AFR][1000 genomes]
rs12153388	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12187203	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs12187264	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13154769	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13158970	0.80[EUR][1000 genomes]
rs13159706	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13165083	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13167540	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs13172264	0.82[EUR][1000 genomes]
rs13172496	0.82[EUR][1000 genomes]
rs13179975	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13186839	0.80[EUR][1000 genomes]
rs13187205	0.80[EUR][1000 genomes]
rs17650275	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34317195	0.80[EUR][1000 genomes]
rs34549773	0.80[EUR][1000 genomes]
rs34974326	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36059089	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958397	0.80[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4958778	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4958781	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4958782	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4958783	0.80[EUR][1000 genomes]
rs66691937	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66859046	0.82[EUR][1000 genomes]
rs67047831	0.82[EUR][1000 genomes]
rs6869991	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870353	0.83[EUR][1000 genomes]
rs6883288	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71597682	0.82[EUR][1000 genomes]
rs7713042	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715693	0.82[EUR][1000 genomes]
rs7719709	0.82[EUR][1000 genomes]
rs7724975	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736559	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154462200-154474400	Weak transcription	Right Ventricle	heart
2	chr5:154464000-154468200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:154464000-154472000	Enhancers	Placenta	Placenta
4	chr5:154464200-154469200	Weak transcription	HUVEC	blood vessel
5	chr5:154464200-154472800	Enhancers	Placenta Amnion	Placenta Amnion
6	chr5:154464600-154468800	Enhancers	Fetal Stomach	stomach
7	chr5:154464800-154468400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr5:154465200-154469600	Enhancers	NHEK	skin
9	chr5:154466600-154468200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:154466600-154468800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr5:154466600-154469800	Enhancers	Fetal Heart	heart
12	chr5:154466800-154468400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
13	chr5:154467000-154468200	Enhancers	Rectal Smooth Muscle	rectum
14	chr5:154467200-154469200	Enhancers	Ovary	ovary
15	chr5:154467400-154470600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr5:154467400-154470600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr5:154467400-154470600	Weak transcription	HMEC	breast
18	chr5:154467400-154470600	Weak transcription	HSMMtube	muscle
19	chr5:154467400-154474800	Weak transcription	Left Ventricle	heart
20	chr5:154468000-154468600	Enhancers	ES-I3 Cell Line	embryonic stem cell

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