Variant report

Variant	rs13154769
Chromosome Location	chr5:154459734-154459735
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10071858	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10077934	0.81[EUR][1000 genomes]
rs10078853	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025301	1.00[ASN][1000 genomes]
rs10454998	0.81[EUR][1000 genomes]
rs12153388	0.81[EUR][1000 genomes]
rs12187203	0.81[EUR][1000 genomes]
rs12187264	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13159706	0.81[EUR][1000 genomes]
rs13165083	0.81[EUR][1000 genomes]
rs13167540	0.81[EUR][1000 genomes]
rs13172264	0.81[EUR][1000 genomes]
rs13172496	0.81[EUR][1000 genomes]
rs13179975	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17650275	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34974326	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36059089	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4958778	0.81[EUR][1000 genomes]
rs4958781	0.81[EUR][1000 genomes]
rs4958782	0.81[EUR][1000 genomes]
rs66691937	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66859046	0.81[EUR][1000 genomes]
rs67047831	0.81[EUR][1000 genomes]
rs67562605	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6869991	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6870353	0.82[EUR][1000 genomes]
rs6883288	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71597682	0.81[EUR][1000 genomes]
rs7713042	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7715693	0.81[EUR][1000 genomes]
rs7719709	0.81[EUR][1000 genomes]
rs7724975	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7736559	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023588	chr5:154415586-154464455	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
2	nsv883059	chr5:154457905-154556230	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:154457000-154459800	Weak transcription	Fetal Heart	heart
2	chr5:154459600-154459800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:154459600-154462200	Enhancers	NHEK	skin
4	chr5:154459600-154462600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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