Variant report

Variant	rs71580826
Chromosome Location	chr1:56920923-56920924
allele	-/A
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1041605	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113636	1.00[AMR][1000 genomes]
rs17113649	1.00[AMR][1000 genomes]
rs17113693	1.00[AMR][1000 genomes]
rs34281211	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34478530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34698235	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34832388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35122994	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35693937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4076887	1.00[AMR][1000 genomes]
rs74073744	1.00[AMR][1000 genomes]
rs74073771	1.00[AMR][1000 genomes]
rs74073777	1.00[AMR][1000 genomes]
rs9436542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869295	chr1:56894955-57656562	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56905400-56942600	Weak transcription	Gastric	stomach
2	chr1:56912800-56922400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:56912800-56923400	Weak transcription	Spleen	Spleen
4	chr1:56913800-56943200	Weak transcription	Aorta	Aorta
5	chr1:56915000-56922400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr1:56915200-56922400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr1:56915200-56935800	Weak transcription	NHLF	lung
8	chr1:56916200-56922200	Weak transcription	Lung	lung
9	chr1:56916400-56921200	Weak transcription	Hela-S3	cervix
10	chr1:56917600-56921400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr1:56918000-56922200	Weak transcription	Small Intestine	intestine
12	chr1:56918000-56922600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr1:56918200-56922000	Weak transcription	A549	lung
14	chr1:56918600-56926600	Weak transcription	Fetal Thymus	thymus
15	chr1:56919000-56923200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr1:56919200-56927200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
17	chr1:56919200-56930000	Weak transcription	NHDF-Ad	bronchial
18	chr1:56919600-56921400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:56919600-56922000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:56919600-56922000	Weak transcription	HepG2	liver
21	chr1:56919600-56922200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr1:56919600-56922200	Weak transcription	Fetal Muscle Leg	muscle
23	chr1:56919600-56922200	Weak transcription	Right Atrium	heart
24	chr1:56919600-56922200	Weak transcription	Right Ventricle	heart
25	chr1:56919600-56922400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr1:56919600-56922600	Weak transcription	Fetal Heart	heart
27	chr1:56919600-56922800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr1:56919600-56923400	Weak transcription	Left Ventricle	heart
29	chr1:56919600-56923600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr1:56919800-56922400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr1:56919800-56922400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr1:56919800-56922600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr1:56919800-56923200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr1:56919800-56926600	Weak transcription	Liver	Liver
35	chr1:56919800-56927000	Weak transcription	HUES6 Cell Line	embryonic stem cell
36	chr1:56919800-56934200	Weak transcription	Fetal Stomach	stomach
37	chr1:56920200-56922200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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