Variant report

Variant	rs17113636
Chromosome Location	chr1:56753639-56753640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1041605	1.00[AMR][1000 genomes]
rs17113390	1.00[AMR][1000 genomes]
rs17113395	1.00[AMR][1000 genomes]
rs17113634	0.93[AFR][1000 genomes]
rs17113649	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17113693	1.00[AMR][1000 genomes]
rs2896880	1.00[AMR][1000 genomes]
rs34281211	1.00[AMR][1000 genomes]
rs34478530	1.00[AMR][1000 genomes]
rs34698235	1.00[AMR][1000 genomes]
rs34832388	1.00[AMR][1000 genomes]
rs35122994	1.00[AMR][1000 genomes]
rs35693937	1.00[AMR][1000 genomes]
rs4076887	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58563317	1.00[AMR][1000 genomes]
rs60333097	1.00[AMR][1000 genomes]
rs61628408	1.00[AMR][1000 genomes]
rs71580826	1.00[AMR][1000 genomes]
rs72910322	1.00[AMR][1000 genomes]
rs72912224	1.00[AMR][1000 genomes]
rs7547444	1.00[AMR][1000 genomes]
rs9436542	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56745400-56757000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:56748400-56759600	Weak transcription	Aorta	Aorta
3	chr1:56751200-56756000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr1:56751400-56756800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:56751400-56757600	Weak transcription	Pancreas	Pancrea
6	chr1:56751800-56756800	Weak transcription	Lung	lung
7	chr1:56752000-56756800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:56752000-56757000	Weak transcription	Fetal Stomach	stomach
9	chr1:56752000-56757000	Weak transcription	HSMMtube	muscle
10	chr1:56752600-56756800	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:56752800-56755000	Weak transcription	Left Ventricle	heart
12	chr1:56752800-56756800	Weak transcription	Adipose Nuclei	Adipose
13	chr1:56752800-56756800	Weak transcription	Psoas Muscle	Psoas
14	chr1:56752800-56756800	Weak transcription	Right Atrium	heart
15	chr1:56752800-56756800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr1:56753000-56754200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr1:56753200-56754000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr1:56753200-56756800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:56753200-56763600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr1:56753400-56754200	Enhancers	Brain Substantia Nigra	brain
21	chr1:56753400-56756800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:56753600-56754000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:56753600-56754200	Enhancers	Brain Hippocampus Middle	brain
24	chr1:56753600-56754400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr1:56753600-56756000	Enhancers	HepG2	liver
26	chr1:56753600-56756800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr1:56753600-56756800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr1:56753600-56756800	Weak transcription	Placenta	Placenta
29	chr1:56753600-56757000	Weak transcription	Placenta Amnion	Placenta Amnion

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