Variant report

Variant	rs60333097
Chromosome Location	chr1:56570628-56570629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17113266	1.00[AMR][1000 genomes]
rs17113293	1.00[AMR][1000 genomes]
rs17113390	1.00[AMR][1000 genomes]
rs17113395	1.00[AMR][1000 genomes]
rs17113636	1.00[AMR][1000 genomes]
rs17113649	1.00[AMR][1000 genomes]
rs17113693	1.00[AMR][1000 genomes]
rs2896880	1.00[AMR][1000 genomes]
rs58563317	1.00[AMR][1000 genomes]
rs61628408	1.00[AMR][1000 genomes]
rs72908400	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910303	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910322	1.00[AMR][1000 genomes]
rs72912224	1.00[AMR][1000 genomes]
rs7547444	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv947488	chr1:56550325-56571505	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56565800-56571200	Weak transcription	Fetal Thymus	thymus
2	chr1:56569800-56570800	ZNF genes & repeats	Dnd41	blood
3	chr1:56570600-56571400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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