Variant report

Variant	rs17113693
Chromosome Location	chr1:56767928-56767929
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:56764262..56765836-chr1:56767748..56769368,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1041605	1.00[AMR][1000 genomes]
rs17113390	1.00[AMR][1000 genomes]
rs17113395	1.00[AMR][1000 genomes]
rs17113636	1.00[AMR][1000 genomes]
rs17113649	1.00[AMR][1000 genomes]
rs2896880	1.00[AMR][1000 genomes]
rs34281211	1.00[AMR][1000 genomes]
rs34478530	1.00[AMR][1000 genomes]
rs34698235	1.00[AMR][1000 genomes]
rs34832388	1.00[AMR][1000 genomes]
rs35122994	1.00[AMR][1000 genomes]
rs35693937	1.00[AMR][1000 genomes]
rs4076887	1.00[AMR][1000 genomes]
rs58563317	1.00[AMR][1000 genomes]
rs60333097	1.00[AMR][1000 genomes]
rs61628408	1.00[AMR][1000 genomes]
rs71580826	1.00[AMR][1000 genomes]
rs72912224	1.00[AMR][1000 genomes]
rs7547444	1.00[AMR][1000 genomes]
rs9436542	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006422	chr1:56734772-56828606	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv534972	chr1:56734772-56828606	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56757800-56786000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr1:56758000-56768000	Weak transcription	Right Ventricle	heart
3	chr1:56758600-56770400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr1:56759800-56768000	Weak transcription	Left Ventricle	heart
5	chr1:56763800-56768200	Weak transcription	Fetal Heart	heart
6	chr1:56763800-56770400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:56764000-56773400	Weak transcription	Psoas Muscle	Psoas
8	chr1:56765200-56795400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr1:56765600-56769200	Weak transcription	Ovary	ovary
10	chr1:56765800-56775000	Weak transcription	HepG2	liver
11	chr1:56766600-56769000	Enhancers	HUVEC	blood vessel
12	chr1:56766600-56770000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr1:56767000-56769800	Enhancers	NHDF-Ad	bronchial
14	chr1:56767200-56768600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr1:56767200-56769000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr1:56767200-56769200	Enhancers	Osteobl	bone
17	chr1:56767600-56768000	Enhancers	Gastric	stomach
18	chr1:56767600-56768200	Enhancers	Aorta	Aorta
19	chr1:56767600-56768600	Enhancers	NH-A	brain
20	chr1:56767600-56769000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:56767600-56769400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr1:56767800-56768200	Enhancers	Hela-S3	cervix
23	chr1:56767800-56768800	Enhancers	NHLF	lung
24	chr1:56767800-56769000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr1:56767800-56769000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr1:56767800-56769000	Enhancers	Fetal Intestine Large	intestine
27	chr1:56767800-56769000	Enhancers	Fetal Intestine Small	intestine
28	chr1:56767800-56769600	Enhancers	Right Atrium	heart
29	chr1:56767800-56770000	Enhancers	Placenta	Placenta

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