Variant report

Variant	rs72912224
Chromosome Location	chr1:56624556-56624557
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs17113266	1.00[AMR][1000 genomes]
rs17113293	1.00[AMR][1000 genomes]
rs17113390	1.00[AMR][1000 genomes]
rs17113395	1.00[AMR][1000 genomes]
rs17113636	1.00[AMR][1000 genomes]
rs17113649	1.00[AMR][1000 genomes]
rs17113693	1.00[AMR][1000 genomes]
rs2896880	1.00[AMR][1000 genomes]
rs4076887	1.00[AMR][1000 genomes]
rs58563317	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60333097	1.00[AMR][1000 genomes]
rs61628408	1.00[AMR][1000 genomes]
rs72908400	1.00[AMR][1000 genomes]
rs72910303	1.00[AMR][1000 genomes]
rs72910322	1.00[AMR][1000 genomes]
rs7547444	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3436415	chr1:56623664-56625062	Weak transcription Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56619400-56624800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:56623400-56624600	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:56623600-56626400	Weak transcription	Fetal Kidney	kidney
4	chr1:56623800-56624800	Weak transcription	Thymus	Thymus
5	chr1:56624400-56625400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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