Variant report

Variant	rs7159356
Chromosome Location	chr14:65450442-65450443
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:40)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:40 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr14:65450303-65450907	HCT-116	colon:	n/a	n/a
2	CTCF	chr14:65450347-65450888	MCF-7	breast:	n/a	n/a
3	RAD21	chr14:65450303-65450890	A549	lung:	n/a	n/a
4	RAD21	chr14:65450405-65450804	IMR90	lung:	n/a	n/a
5	RUNX3	chr14:65450418-65450769	GM12878	blood:	n/a	n/a
6	CTCF	chr14:65450376-65450781	ECC-1	luminal epithelium:	n/a	n/a
7	RAD21	chr14:65450314-65450992	MCF-7	breast:	n/a	n/a
8	RAD21	chr14:65450370-65450775	H1-hESC	embryonic stem cell:	n/a	n/a
9	RAD21	chr14:65450349-65450866	HepG2	liver:	n/a	n/a
10	CTCF	chr14:65450098-65451420	A549	lung:	n/a	n/a
11	SMC3	chr14:65450383-65450796	GM12878	blood:	n/a	n/a
12	CTCF	chr14:65450389-65450800	H1-hESC	embryonic stem cell:	n/a	n/a
13	RAD21	chr14:65450409-65450845	HepG2	liver:	n/a	n/a
14	CTCF	chr14:65450369-65450857	T-47D	breast:	n/a	n/a
15	RAD21	chr14:65450345-65450824	ECC-1	luminal epithelium:	n/a	n/a
16	CTCF	chr14:65450401-65450816	GM12878	blood:	n/a	n/a
17	RAD21	chr14:65450298-65450808	MCF-7	breast:	n/a	n/a
18	RAD21	chr14:65450325-65450858	HCT-116	colon:	n/a	n/a
19	RAD21	chr14:65450430-65450733	SK-N-SH_RA	brain:	n/a	n/a
20	CTCF	chr14:65450320-65450470	WI-38	lung:	n/a	n/a
21	CTCF	chr14:65450372-65450866	HCT-116	colon:	n/a	n/a
22	ARID3A	chr14:65450410-65450788	HepG2	liver:	n/a	n/a
23	SMC3	chr14:65450420-65450779	Hela-S3	cervix:	n/a	n/a
24	CTCF	chr14:65450364-65450796	HepG2	liver:	n/a	n/a
25	RAD21	chr14:65450412-65450800	GM12878	blood:	n/a	n/a
26	RAD21	chr14:65450396-65450803	Hela-S3	cervix:	n/a	n/a
27	CTCF	chr14:65450344-65450832	A549	lung:	n/a	n/a
28	RAD21	chr14:65450277-65450790	H1-hESC	embryonic stem cell:	n/a	n/a
29	RAD21	chr14:65450407-65450802	GM12878	blood:	n/a	n/a
30	SMC3	chr14:65450140-65451335	SK-N-SH	brain:	n/a	n/a
31	CTCF	chr14:65450395-65450905	IMR90	lung:	n/a	n/a
32	RAD21	chr14:65450393-65450733	HepG2	liver:	n/a	n/a
33	RAD21	chr14:65450414-65450832	A549	lung:	n/a	n/a
34	CTCF	chr14:65450410-65450799	K562	blood:	n/a	n/a
35	RAD21	chr14:65450159-65450844	H1-hESC	embryonic stem cell:	n/a	n/a
36	RAD21	chr14:65450130-65450874	SK-N-SH	brain:	n/a	n/a
37	CTCF	chr14:65450407-65450724	A549	lung:	n/a	n/a
38	CTCF	chr14:65450145-65451361	SK-N-SH	brain:	n/a	n/a
39	RAD21	chr14:65450314-65450876	ECC-1	luminal epithelium:	n/a	n/a
40	CTCF	chr14:65450359-65450877	MCF-7	breast:	n/a	n/a

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65268004..65268870-chr14:65450202..65451035,3	K562	blood:
2	chr14:65437470..65440876-chr14:65446847..65451096,5	MCF-7	breast:
3	chr14:65238740..65239678-chr14:65450354..65450864,2	MCF-7	breast:
4	chr14:65450129..65451062-chr14:65486362..65487163,3	MCF-7	breast:
5	chr14:65226282..65227169-chr14:65450174..65450950,2	MCF-7	breast:
6	chr14:65449396..65452013-chr14:65452277..65456191,3	K562	blood:
7	chr14:65377331..65378166-chr14:65449998..65450968,5	MCF-7	breast:
8	chr14:65404338..65405141-chr14:65450202..65451438,3	MCF-7	breast:
9	chr14:65435373..65439522-chr14:65449572..65455038,8	MCF-7	breast:
10	chr14:65381014..65382741-chr14:65448776..65450867,2	MCF-7	breast:
11	chr14:65443562..65445334-chr14:65448735..65450470,2	MCF-7	breast:
12	chr14:65447542..65451008-chr14:65452135..65454598,3	MCF-7	breast:
13	chr14:65376890..65379070-chr14:65449089..65451973,3	MCF-7	breast:
14	chr14:65380980..65382941-chr14:65450288..65451941,2	MCF-7	breast:

No data

Variant related genes	Relation type
FNTB	TF binding region
ENSG00000125954	Chromatin interaction
ENSG00000257365	Chromatin interaction
ENSG00000258289	Chromatin interaction
ENSG00000139998	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs55723212	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56012740	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56381821	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72728221	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72728225	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72728226	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72728229	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65439600-65453600	Weak transcription	Aorta	Aorta
2	chr14:65446600-65453400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:65446600-65453600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr14:65446800-65453000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr14:65446800-65453000	Weak transcription	Fetal Intestine Large	intestine
6	chr14:65446800-65453200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr14:65446800-65453200	Weak transcription	Placenta	Placenta
8	chr14:65450200-65450600	Active TSS	H9 Cell Line	embryonic stem cell
9	chr14:65450200-65450600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:65450200-65450600	Active TSS	HUES48 Cell Line	embryonic stem cell
11	chr14:65450200-65450600	Active TSS	HUES6 Cell Line	embryonic stem cell
12	chr14:65450200-65450600	Active TSS	HUES64 Cell Line	embryonic stem cell
13	chr14:65450200-65450600	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr14:65450200-65450600	Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr14:65450200-65450600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:65450200-65450600	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr14:65450200-65450600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:65450200-65450600	Active TSS	Breast Myoepithelial Primary Cells	Breast
19	chr14:65450200-65450600	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr14:65450200-65450600	Bivalent Enhancer	Primary B cells from cord blood	blood
21	chr14:65450200-65450600	Enhancers	Primary B cells from peripheral blood	blood
22	chr14:65450200-65450600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
23	chr14:65450200-65450600	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr14:65450200-65450600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr14:65450200-65450600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr14:65450200-65450600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
27	chr14:65450200-65450600	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr14:65450200-65450600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr14:65450200-65450600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:65450200-65450600	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
31	chr14:65450200-65450600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr14:65450200-65450600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:65450200-65450600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:65450200-65450600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr14:65450200-65450600	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr14:65450200-65450600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:65450200-65450600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr14:65450200-65450600	Flanking Active TSS	Liver	Liver
39	chr14:65450200-65450600	Enhancers	Brain Angular Gyrus	brain
40	chr14:65450200-65450600	Enhancers	Brain Cingulate Gyrus	brain
41	chr14:65450200-65450600	Enhancers	Brain Hippocampus Middle	brain
42	chr14:65450200-65450600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
43	chr14:65450200-65450600	Enhancers	Colon Smooth Muscle	Colon
44	chr14:65450200-65450600	Flanking Active TSS	Duodenum Mucosa	Duodenum
45	chr14:65450200-65450600	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr14:65450200-65450600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
47	chr14:65450200-65450600	Enhancers	Fetal Intestine Small	intestine
48	chr14:65450200-65450600	Active TSS	Fetal Kidney	kidney
49	chr14:65450200-65450600	Flanking Active TSS	Fetal Lung	lung
50	chr14:65450200-65450600	Enhancers	Left Ventricle	heart

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