Variant report

Variant	rs7162299
Chromosome Location	chr15:72414065-72414066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:72410388..72414346-chr15:72462434..72466396,3	K562	blood:
2	chr15:72409555..72412428-chr15:72413056..72416140,3	K562	blood:
3	chr15:72409555..72412428-chr15:72412821..72416140,4	K562	blood:
4	chr15:72398211..72399947-chr15:72411763..72414182,2	MCF-7	breast:
5	chr15:72412621..72414863-chr15:72421242..72424090,2	K562	blood:

Variant related genes	Relation type
ENSG00000175318	Chromatin interaction
ENSG00000066933	Chromatin interaction
ENSG00000166192	Chromatin interaction

Extended variants
information (count: 116 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:108)

rs_ID	r²[population]
rs1000281	0.89[GIH][hapmap];0.84[JPT][hapmap];0.88[MEX][hapmap];0.83[EUR][1000 genomes]
rs1035744	0.92[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap];0.81[EUR][1000 genomes]
rs10851850	0.81[GIH][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.87[EUR][1000 genomes]
rs11072349	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11072350	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11630170	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11630611	0.80[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11631650	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11633167	0.83[EUR][1000 genomes]
rs11634608	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11634622	0.82[EUR][1000 genomes]
rs11637611	0.89[GIH][hapmap];0.89[JPT][hapmap];0.88[MEX][hapmap];0.83[EUR][1000 genomes]
rs11639282	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12050794	0.84[EUR][1000 genomes]
rs12148078	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12442886	0.80[AMR][1000 genomes]
rs12912771	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs13858	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1481860	0.81[EUR][1000 genomes]
rs1481861	0.80[EUR][1000 genomes]
rs1481862	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16956369	0.84[EUR][1000 genomes]
rs16956623	0.89[JPT][hapmap]
rs2034879	0.82[CHB][hapmap];0.83[CHD][hapmap];0.81[GIH][hapmap];0.94[MEX][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2052713	0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2128112	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2278987	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2306489	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2306576	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2415126	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2415128	0.81[ASN][1000 genomes]
rs2415134	0.95[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28717020	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2899775	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2899776	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2929508	0.94[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2929509	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2929510	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2929511	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2929513	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2929517	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2929518	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.83[YRI][hapmap]
rs2929525	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2929526	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2929527	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2929528	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2929532	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2930069	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2957361	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957365	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957368	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2957373	0.82[CHB][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2957724	0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2957725	0.82[CHB][hapmap];0.83[CHD][hapmap];0.94[GIH][hapmap];0.88[MEX][hapmap];0.81[EUR][1000 genomes]
rs2957728	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2957734	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.82[YRI][hapmap];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957735	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957736	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957737	0.82[CHB][hapmap];0.83[CHD][hapmap];0.91[GIH][hapmap];0.88[MEX][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2957740	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2957742	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957743	0.88[AMR][1000 genomes]
rs2957745	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957746	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957750	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35603965	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3759820	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3759900	0.89[ASW][hapmap];0.82[CHB][hapmap];0.81[CHD][hapmap];0.94[GIH][hapmap];0.94[MEX][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3759902	0.81[AMR][1000 genomes]
rs3784313	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4454922	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4506844	0.94[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.81[AMR][1000 genomes]
rs4777485	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55679065	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55763892	0.82[EUR][1000 genomes]
rs59975112	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62022788	0.81[EUR][1000 genomes]
rs62022789	0.81[EUR][1000 genomes]
rs62023343	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6494990	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6494992	0.95[CHB][hapmap];0.95[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6494997	0.94[GIH][hapmap];0.89[JPT][hapmap];0.88[MEX][hapmap];0.82[EUR][1000 genomes]
rs7164780	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7170456	0.90[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7172158	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7173626	0.84[EUR][1000 genomes]
rs7175197	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7175373	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7175792	0.88[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7179427	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7179942	0.82[EUR][1000 genomes]
rs7183055	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7183810	0.81[EUR][1000 genomes]
rs8023788	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8025939	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8027164	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8027647	0.82[EUR][1000 genomes]
rs8028115	0.85[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.94[MEX][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8030815	0.95[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.94[MEX][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8032222	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8036307	0.84[EUR][1000 genomes]
rs8037381	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8038007	0.81[EUR][1000 genomes]
rs8040216	0.90[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8040828	0.89[ASW][hapmap];0.94[GIH][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8182011	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8192362	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9302260	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
8	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7162299	MYO9A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72411400-72414200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:72411400-72432000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:72411600-72414200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:72411600-72415000	Weak transcription	Right Ventricle	heart
5	chr15:72411600-72428000	Weak transcription	Left Ventricle	heart
6	chr15:72411600-72433800	Weak transcription	Fetal Intestine Small	intestine
7	chr15:72411800-72416600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr15:72411800-72421000	Weak transcription	Fetal Kidney	kidney
9	chr15:72412200-72431800	Weak transcription	Psoas Muscle	Psoas
10	chr15:72412600-72414400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr15:72412800-72414200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr15:72413800-72414200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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