Variant report

Variant	rs1035744
Chromosome Location	chr15:72566615-72566616
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72564706..72566745-chr15:72598121..72601390,3	K562	blood:
2	chr15:72514333..72526693-chr15:72558323..72568559,52	MCF-7	breast:
3	chr15:72519310..72525410-chr15:72562881..72568730,22	MCF-7	breast:
4	chr15:72563307..72566923-chr15:72766066..72767771,3	K562	blood:
5	chr15:72555118..72559591-chr15:72562362..72567008,6	MCF-7	breast:
6	chr15:72518424..72531344-chr15:72562525..72571046,23	K562	blood:
7	chr15:72564850..72566745-chr15:72598121..72600222,2	K562	blood:
8	chr15:72563307..72566923-chr15:72766066..72767771,5	K562	blood:
9	chr15:72565043..72567062-chr15:72568655..72571579,4	K562	blood:
10	chr15:72513653..72518363-chr15:72563063..72568184,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000067225	Chromatin interaction
ENSG00000137817	Chromatin interaction
ENSG00000140488	Chromatin interaction
ENSG00000261423	Chromatin interaction
ENSG00000166233	Chromatin interaction
ENSG00000261460	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1000281	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.88[LWK][hapmap];0.89[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10851850	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11072346	0.82[TSI][hapmap]
rs11072349	0.89[EUR][1000 genomes]
rs11072350	0.91[EUR][1000 genomes]
rs11630170	0.89[CEU][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs11630611	0.90[JPT][hapmap];0.85[EUR][1000 genomes]
rs11633327	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11634622	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11637611	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.89[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12442886	0.89[CEU][hapmap];0.84[TSI][hapmap];0.81[EUR][1000 genomes]
rs12591338	0.83[CEU][hapmap]
rs12592044	0.85[TSI][hapmap]
rs12901886	0.82[TSI][hapmap]
rs12904652	0.89[CEU][hapmap];0.80[GIH][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs13858	0.84[CEU][hapmap];0.82[CHB][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.82[EUR][1000 genomes]
rs16956623	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16956634	0.83[CEU][hapmap]
rs2034879	0.84[MEX][hapmap];0.85[TSI][hapmap]
rs2052713	0.95[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2278987	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs2415134	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2912231	0.83[CEU][hapmap];0.85[TSI][hapmap]
rs2957365	0.80[EUR][1000 genomes]
rs35603965	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3759900	0.83[CEU][hapmap];0.85[GIH][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.83[EUR][1000 genomes]
rs3759902	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4506844	0.94[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.87[MKK][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55763892	0.97[EUR][1000 genomes]
rs62022788	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62022789	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6494992	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes]
rs6494997	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.89[MEX][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs713048	0.89[CEU][hapmap]
rs7162299	0.92[GIH][hapmap];0.89[JPT][hapmap];0.83[MEX][hapmap];0.81[EUR][1000 genomes]
rs7164780	0.80[EUR][1000 genomes]
rs7169264	0.83[EUR][1000 genomes]
rs7170456	0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs7172309	0.82[TSI][hapmap]
rs7175197	0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs7175792	0.89[CEU][hapmap];0.82[CHB][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.90[TSI][hapmap]
rs7179427	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7179942	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7182776	0.85[TSI][hapmap]
rs7183055	0.82[EUR][1000 genomes]
rs7183196	0.89[CEU][hapmap];0.80[GIH][hapmap];0.84[TSI][hapmap]
rs7183810	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8023788	0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs8025939	0.82[CHB][hapmap];0.95[JPT][hapmap];0.87[EUR][1000 genomes]
rs8027164	0.89[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs8027647	0.98[EUR][1000 genomes]
rs8030815	0.88[ASW][hapmap];0.89[CEU][hapmap];0.82[CHB][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.80[EUR][1000 genomes]
rs8032222	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8037381	0.81[EUR][1000 genomes]
rs8038007	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8040828	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.92[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8192362	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8192386	0.83[CEU][hapmap];0.82[TSI][hapmap]
rs8192431	0.83[CEU][hapmap];0.82[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv1601	chr15:72549885-72585176	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs1035744	SENP8	cis	cerebellum	SCAN
rs1035744	MYO9A	Cis_1M	lymphoblastoid	RTeQTL
rs1035744	TIPIN	cis	parietal	SCAN
rs1035744	AAGAB	cis	cerebellum	SCAN
rs1035744	PARP6	cis	parietal	SCAN

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72565600-72569800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr15:72565800-72568400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr15:72565800-72572600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr15:72566000-72566800	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr15:72566000-72567000	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr15:72566000-72567400	Weak transcription	Fetal Muscle Leg	muscle
7	chr15:72566000-72567400	Weak transcription	HSMMtube	muscle
8	chr15:72566000-72567600	Weak transcription	HSMM	muscle
9	chr15:72566000-72567800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:72566000-72568600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:72566000-72568800	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr15:72566000-72571000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr15:72566000-72573600	Weak transcription	Brain Anterior Caudate	brain
14	chr15:72566000-72573600	Weak transcription	Brain Substantia Nigra	brain
15	chr15:72566000-72575800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr15:72566000-72576400	Weak transcription	Colon Smooth Muscle	Colon
17	chr15:72566000-72577800	Weak transcription	Fetal Intestine Small	intestine
18	chr15:72566000-72582400	Weak transcription	Stomach Smooth Muscle	stomach
19	chr15:72566000-72611400	Weak transcription	Right Ventricle	heart
20	chr15:72566200-72567400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:72566200-72573000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr15:72566200-72573600	Weak transcription	Brain Hippocampus Middle	brain
23	chr15:72566200-72577000	Weak transcription	Ovary	ovary
24	chr15:72566200-72577600	Weak transcription	Brain Angular Gyrus	brain
25	chr15:72566200-72578400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr15:72566200-72579200	Weak transcription	Primary T cells from cord blood	blood
27	chr15:72566400-72573600	Weak transcription	K562	blood

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