Variant report

Variant	rs2278987
Chromosome Location	chr15:72409769-72409770
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr15:72409374-72411234	SK-N-SH	brain:	n/a	chr15:72410049-72410059 chr15:72409969-72409978 chr15:72410199-72410209
2	YY1	chr15:72409512-72409886	GM12891	blood:	n/a	n/a
3	POLR2A	chr15:72409428-72411734	GM18505	blood:	n/a	n/a
4	POLR2A	chr15:72409716-72411227	GM15510	blood:	n/a	n/a
5	MTA3	chr15:72409007-72410281	GM12878	blood:	n/a	n/a
6	POLR2A	chr15:72409710-72411307	PFSK-1	brain:	n/a	n/a
7	CREB1	chr15:72409753-72411145	A549	lung:	n/a	n/a
8	MYC	chr15:72409469-72409790	H1-hESC	embryonic stem cell:	n/a	n/a
9	POLR2A	chr15:72409709-72411306	SK-N-SH	brain:	n/a	n/a
10	POLR2A	chr15:72409505-72411176	HEK293	kidney:	n/a	n/a
11	POLR2A	chr15:72409526-72411208	GM12878	blood:	n/a	n/a
12	SMARCB1	chr15:72409531-72411126	Hela-S3	cervix:	n/a	n/a
13	SIN3AK20	chr15:72409619-72411384	MCF-7	breast:	n/a	n/a
14	YY1	chr15:72409631-72410384	SK-N-SH_RA	brain:	n/a	chr15:72410184-72410195 chr15:72410186-72410195 chr15:72410042-72410053
15	MAZ	chr15:72409219-72411349	K562	blood:	n/a	chr15:72410049-72410059 chr15:72409969-72409978 chr15:72410199-72410209
16	SIN3A	chr15:72409052-72411440	H1-hESC	embryonic stem cell:	n/a	chr15:72409994-72410005
17	ZBTB7A	chr15:72409336-72410571	ECC-1	luminal epithelium:	n/a	n/a
18	TAF1	chr15:72409700-72411206	SK-N-SH	brain:	n/a	n/a
19	MAX	chr15:72409024-72411544	NB4	blood:	n/a	chr15:72410049-72410059 chr15:72409969-72409978 chr15:72409091-72409099 chr15:72410199-72410209
20	POLR2A	chr15:72409466-72411283	MCF10A-Er-Src	breast:	n/a	n/a
21	POLR2A	chr15:72409371-72409870	H1-neurons	neurons:	n/a	n/a
22	SIN3AK20	chr15:72409470-72411225	SK-N-SH	brain:	n/a	n/a
23	CHD2	chr15:72409738-72411048	Hela-S3	cervix:	n/a	chr15:72410177-72410187 chr15:72409929-72409939
24	MAZ	chr15:72409435-72411145	Hela-S3	cervix:	n/a	chr15:72410049-72410059 chr15:72409969-72409978 chr15:72410199-72410209
25	POLR2A	chr15:72409594-72411208	U87	brain:	n/a	n/a
26	POLR2A	chr15:72409603-72411292	ProgFib	skin:	n/a	n/a
27	MAZ	chr15:72409513-72411500	GM12878	blood:	n/a	chr15:72410049-72410059 chr15:72409969-72409978 chr15:72410199-72410209
28	POLR2A	chr15:72409601-72411208	U87	brain:	n/a	n/a
29	POLR2A	chr15:72409658-72411147	HUVEC	blood vessel:	n/a	n/a
30	MAX	chr15:72409769-72411235	K562	blood:	n/a	chr15:72410049-72410059 chr15:72409969-72409978 chr15:72410199-72410209
31	SIN3AK20	chr15:72409435-72410726	PANC-1	pancreas:	n/a	n/a
32	MYC	chr15:72409452-72411525	NB4	blood:	n/a	chr15:72410049-72410059 chr15:72409969-72409978 chr15:72410199-72410209
33	CREB1	chr15:72409754-72411211	HepG2	liver:	n/a	n/a
34	POLR2A	chr15:72409727-72411098	GM12878	blood:	n/a	n/a
35	UBTF	chr15:72409386-72410884	K562	blood:	n/a	n/a
36	MAX	chr15:72409659-72411427	A549	lung:	n/a	chr15:72410049-72410059 chr15:72409969-72409978 chr15:72410199-72410209
37	CTBP2	chr15:72409489-72411135	H1-hESC	embryonic stem cell:	n/a	n/a
38	PML	chr15:72409543-72411069	MCF-7	breast:	n/a	n/a
39	POLR2A	chr15:72409741-72411031	A549	lung:	n/a	n/a
40	ZNF143	chr15:72409684-72409776	H1-hESC	embryonic stem cell:	n/a	n/a
41	POLR2A	chr15:72409698-72411108	GM12878	blood:	n/a	n/a
42	POLR2A	chr15:72409644-72411176	K562	blood:	n/a	n/a
43	HCFC1	chr15:72408717-72411333	Hela-S3	cervix:	n/a	n/a
44	YY1	chr15:72409356-72411185	GM12892	blood:	n/a	chr15:72410184-72410195 chr15:72410612-72410626 chr15:72410186-72410195 chr15:72410390-72410399 chr15:72410042-72410053
45	RCOR1	chr15:72409033-72411551	K562	blood:	n/a	n/a
46	POLR2A	chr15:72409383-72411337	GM12878	blood:	n/a	n/a
47	POLR2A	chr15:72409452-72411310	IMR90	lung:	n/a	n/a
48	NRF1	chr15:72409426-72411285	SK-N-SH	brain:	n/a	chr15:72410580-72410589 chr15:72410578-72410589 chr15:72410578-72410589 chr15:72410575-72410589 chr15:72410578-72410592 chr15:72410481-72410495
49	REST	chr15:72409730-72410470	A549	lung:	n/a	chr15:72410250-72410260
50	TAF1	chr15:72409738-72411241	ECC-1	luminal epithelium:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:69743849..69745373-chr15:72408849..72410526,2	K562	blood:
2	chr15:72409625..72411643-chr15:72517695..72521104,3	MCF-7	breast:
3	chr15:72405635..72407377-chr15:72409076..72410696,2	K562	blood:
4	chr12:56472852..56474352-chr15:72409607..72411955,2	MCF-7	breast:
5	chr15:72409540..72412383-chr15:72425883..72429173,3	MCF-7	breast:
6	chr15:72409322..72412006-chr15:72563414..72566011,3	MCF-7	breast:
7	chr15:72408747..72410825-chr15:72521864..72524427,3	MCF-7	breast:

Variant related genes	Relation type
SENP8	TF binding region
ENSG00000067225	Chromatin interaction
ENSG00000137818	Chromatin interaction
ENSG00000243568	Chromatin interaction
ENSG00000065361	Chromatin interaction
ENSG00000137817	Chromatin interaction
ENSG00000166192	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:122)

rs_ID	r²[population]
rs1000281	0.88[CEU][hapmap];0.82[CHB][hapmap];0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs1035744	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.80[EUR][1000 genomes]
rs1074330	0.82[CEU][hapmap]
rs10851850	0.88[CEU][hapmap];0.95[JPT][hapmap];0.86[EUR][1000 genomes]
rs11072349	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11072350	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11630170	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11630611	0.89[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11631650	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11633167	0.85[EUR][1000 genomes]
rs11634608	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11634622	0.81[EUR][1000 genomes]
rs11637611	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs11639282	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12050794	0.84[EUR][1000 genomes]
rs12148078	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12439494	0.81[EUR][1000 genomes]
rs12442886	0.80[AMR][1000 genomes]
rs12592044	0.82[CEU][hapmap]
rs12901886	0.82[CEU][hapmap]
rs12902006	0.82[CEU][hapmap]
rs12912771	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12914070	0.82[CEU][hapmap]
rs12916951	0.82[CEU][hapmap]
rs13858	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1481860	0.83[EUR][1000 genomes]
rs1481861	0.82[EUR][1000 genomes]
rs1481862	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16956369	0.85[EUR][1000 genomes]
rs16956623	0.83[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap]
rs2034879	0.83[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2052713	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2128112	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2306489	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2306576	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2415126	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2415128	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2415134	0.83[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs28650442	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28717020	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2899775	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2899776	0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2929508	0.93[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2929509	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2929510	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2929511	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2929513	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2929517	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2929518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs2929525	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2929526	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2929527	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2929528	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2929532	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2930069	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2957361	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957365	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957368	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2957373	0.94[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.87[YRI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2957724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2957725	0.94[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.83[EUR][1000 genomes]
rs2957728	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2957734	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957735	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957736	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957737	0.94[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2957740	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2957742	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957743	0.88[AMR][1000 genomes]
rs2957745	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957746	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2957750	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34189331	0.80[EUR][1000 genomes]
rs35603965	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3743224	0.82[CEU][hapmap]
rs3759820	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3759900	0.94[CEU][hapmap];0.87[CHB][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3759902	0.81[AMR][1000 genomes]
rs3784313	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4454922	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4506844	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs4776586	0.83[CEU][hapmap]
rs4777485	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs55679065	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55763892	0.81[EUR][1000 genomes]
rs59975112	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62022788	0.80[EUR][1000 genomes]
rs62022789	0.80[EUR][1000 genomes]
rs62023343	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6494990	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6494992	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6494997	0.88[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes]
rs7162299	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7164780	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7170456	0.89[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7172158	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7172309	0.82[CEU][hapmap]
rs7173626	0.86[EUR][1000 genomes]
rs7175197	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7175373	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7175792	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7179427	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7179942	0.81[EUR][1000 genomes]
rs7182776	0.82[CEU][hapmap]
rs7183055	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7183810	0.80[EUR][1000 genomes]
rs7497104	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8023788	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8025939	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8027164	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8027647	0.81[EUR][1000 genomes]
rs8028115	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8030815	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8032222	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8036307	0.86[EUR][1000 genomes]
rs8037381	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8038007	0.80[EUR][1000 genomes]
rs8040216	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8040828	0.88[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8182011	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8192362	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9302260	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1042740	chr15:72128799-72482239	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv542426	chr15:72128799-72482239	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
5	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
6	nsv833051	chr15:72315471-72508429	Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
7	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
8	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2278987	MYO9A	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72407600-72411000	Active TSS	Stomach Smooth Muscle	stomach
2	chr15:72407800-72411800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:72407800-72412400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr15:72408000-72411200	Active TSS	Fetal Kidney	kidney
5	chr15:72408200-72411600	Active TSS	Brain Angular Gyrus	brain
6	chr15:72408200-72411600	Active TSS	Fetal Muscle Leg	muscle
7	chr15:72408400-72410200	Active TSS	Right Atrium	heart
8	chr15:72408400-72411200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:72408400-72411200	Active TSS	Duodenum Smooth Muscle	Duodenum
10	chr15:72408400-72411200	Active TSS	Fetal Lung	lung
11	chr15:72408400-72411400	Active TSS	Aorta	Aorta
12	chr15:72408400-72411600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr15:72408400-72411800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:72408400-72411800	Active TSS	NHDF-Ad	bronchial
15	chr15:72408600-72409800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:72408600-72409800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:72408600-72411000	Active TSS	Fetal Stomach	stomach
18	chr15:72408600-72411000	Active TSS	Osteobl	bone
19	chr15:72408600-72411200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:72408600-72411200	Active TSS	Breast Myoepithelial Primary Cells	Breast
21	chr15:72408600-72411200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:72408600-72411200	Active TSS	Fetal Intestine Large	intestine
23	chr15:72408600-72411600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr15:72408600-72411600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:72408600-72411600	Active TSS	HSMMtube	muscle
26	chr15:72408600-72411800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:72408600-72411800	Active TSS	NHLF	lung
28	chr15:72408800-72409800	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr15:72408800-72409800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
30	chr15:72408800-72409800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
31	chr15:72408800-72409800	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr15:72408800-72409800	Active TSS	Fetal Heart	heart
33	chr15:72408800-72409800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr15:72408800-72410600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr15:72408800-72411200	Active TSS	iPS-15b Cell Line	embryonic stem cell
36	chr15:72408800-72411200	Active TSS	Colon Smooth Muscle	Colon
37	chr15:72408800-72411200	Active TSS	Lung	lung
38	chr15:72408800-72411200	Active TSS	Placenta Amnion	Placenta Amnion
39	chr15:72408800-72411400	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr15:72408800-72411400	Active TSS	Fetal Intestine Small	intestine
41	chr15:72408800-72411400	Active TSS	Ovary	ovary
42	chr15:72408800-72411600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr15:72408800-72411600	Active TSS	Brain Anterior Caudate	brain
44	chr15:72408800-72411600	Active TSS	Fetal Muscle Trunk	muscle
45	chr15:72408800-72411600	Active TSS	Psoas Muscle	Psoas
46	chr15:72408800-72411600	Active TSS	Right Ventricle	heart
47	chr15:72408800-72411800	Active TSS	Muscle Satellite Cultured Cells	--
48	chr15:72408800-72412800	Active TSS	ES-I3 Cell Line	embryonic stem cell
49	chr15:72409000-72409800	Flanking Active TSS	Primary B cells from cord blood	blood
50	chr15:72409000-72409800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links