Variant report

Variant	rs71643205
Chromosome Location	chr1:79027792-79027793
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12060353	0.81[EUR][1000 genomes]
rs12065196	0.81[EUR][1000 genomes]
rs12074883	0.81[EUR][1000 genomes]
rs12723149	0.91[EUR][1000 genomes]
rs12731181	0.95[EUR][1000 genomes]
rs12737007	0.90[EUR][1000 genomes]
rs12743477	0.89[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12750516	0.95[EUR][1000 genomes]
rs12751216	0.93[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs17393482	0.89[EUR][1000 genomes]
rs17397597	0.89[EUR][1000 genomes]
rs2057425	0.93[EUR][1000 genomes]
rs34427371	0.93[EUR][1000 genomes]
rs34491075	0.81[EUR][1000 genomes]
rs34635429	0.87[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs34727624	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35153996	0.95[EUR][1000 genomes]
rs35223399	0.95[EUR][1000 genomes]
rs35337590	0.95[EUR][1000 genomes]
rs35735651	0.95[EUR][1000 genomes]
rs35886379	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs35922757	0.81[EUR][1000 genomes]
rs36037890	0.95[EUR][1000 genomes]
rs36088152	0.93[EUR][1000 genomes]
rs41309153	0.95[EUR][1000 genomes]
rs41313355	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs71641401	0.93[EUR][1000 genomes]
rs71643204	0.93[EUR][1000 genomes]
rs7539356	0.95[EUR][1000 genomes]
rs7539847	0.93[EUR][1000 genomes]
rs898	0.95[EUR][1000 genomes]
rs899	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv870807	chr1:78867347-79032598	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
3	nsv830315	chr1:79008443-79200591	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	esv3375099	chr1:79010980-79033337	Enhancers Weak transcription ZNF genes & repeats Active TSS	n/a	n/a	inside rSNPs	diseases
5	nsv1577	chr1:79013311-79058575	Enhancers Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv945936	chr1:79027456-79032369	Active TSS Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79026000-79028600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:79027200-79027800	Active TSS	Monocytes-CD14+_RO01746	blood

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