Variant report

Variant	rs7166054
Chromosome Location	chr15:74071584-74071585
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12913601	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4886407	0.84[AFR][1000 genomes]
rs4887167	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs896592	0.83[AMR][1000 genomes]
rs896597	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74060800-74073000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:74061000-74076600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:74064200-74073200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:74066000-74076400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:74066400-74073400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:74066600-74080200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:74067600-74072000	Weak transcription	K562	blood
8	chr15:74067600-74077400	Weak transcription	Brain Cingulate Gyrus	brain
9	chr15:74067800-74073000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr15:74067800-74073000	Weak transcription	Fetal Heart	heart
11	chr15:74068600-74078800	Weak transcription	Right Atrium	heart
12	chr15:74068600-74078800	Weak transcription	Right Ventricle	heart
13	chr15:74069800-74071600	Weak transcription	Esophagus	oesophagus
14	chr15:74070000-74072400	Weak transcription	Left Ventricle	heart
15	chr15:74070600-74075000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:74071000-74072000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:74071200-74072000	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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