Variant report

Variant	rs896592
Chromosome Location	chr15:74150213-74150214
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12591520	0.83[AMR][1000 genomes]
rs12902228	0.83[AMR][1000 genomes]
rs12913601	0.83[AMR][1000 genomes]
rs1349644	0.88[AFR][1000 genomes]
rs1377061	0.83[AMR][1000 genomes]
rs1452383	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1452384	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs1564238	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2053960	0.86[AFR][1000 genomes]
rs2218948	0.83[AMR][1000 genomes]
rs4886407	0.83[AMR][1000 genomes]
rs4886650	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4887167	0.83[AMR][1000 genomes]
rs7166054	0.83[AMR][1000 genomes]
rs7182368	0.99[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs8031645	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs896597	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs921537	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs921538	0.83[AMR][1000 genomes]
rs921540	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74148400-74150400	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr15:74149400-74154400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:74149400-74154600	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr15:74149600-74154400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:74149600-74158600	Weak transcription	Right Atrium	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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