Variant report

Variant	rs8031645
Chromosome Location	chr15:74133583-74133584
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11574481	1.00[MEX][hapmap]
rs12591520	1.00[AMR][1000 genomes]
rs12902228	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12902790	1.00[MEX][hapmap]
rs1349644	0.81[AFR][1000 genomes]
rs1377061	1.00[AMR][1000 genomes]
rs1440102	1.00[MEX][hapmap]
rs1452383	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1452384	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1564238	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2218948	1.00[AMR][1000 genomes]
rs4886407	1.00[AMR][1000 genomes]
rs4886650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7178358	1.00[MEX][hapmap]
rs7182368	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs744617	1.00[MEX][hapmap]
rs8027445	1.00[MEX][hapmap]
rs896592	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs896597	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs921537	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs921538	1.00[AMR][1000 genomes]
rs921540	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74131800-74136800	Weak transcription	Pancreas	Pancrea
2	chr15:74132200-74133800	Weak transcription	Right Atrium	heart
3	chr15:74132200-74134000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr15:74132400-74134200	Weak transcription	Fetal Brain Female	brain
5	chr15:74132400-74146600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:74132800-74134000	Weak transcription	Fetal Brain Male	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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