Variant report

Variant	rs1452384
Chromosome Location	chr15:74144757-74144758
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12591520	1.00[AMR][1000 genomes]
rs12902228	1.00[AMR][1000 genomes]
rs1349644	0.88[AFR][1000 genomes]
rs1377061	1.00[AMR][1000 genomes]
rs1452383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1564238	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2053960	0.86[AFR][1000 genomes]
rs2218948	1.00[AMR][1000 genomes]
rs4886407	1.00[AMR][1000 genomes]
rs4886650	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7182368	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031645	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs896592	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs896597	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs921537	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs921538	1.00[AMR][1000 genomes]
rs921540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74132400-74146600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:74142200-74146600	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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