Variant report
| Variant | rs1377061 |
|---|---|
| Chromosome Location | chr15:74112108-74112109 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:42)
| rs_ID | r2[population] |
|---|---|
| rs10775207 | 1.00[TSI][hapmap] |
| rs11574481 | 1.00[MEX][hapmap] |
| rs12591520 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12902228 | 1.00[AMR][1000 genomes] |
| rs12902790 | 1.00[MEX][hapmap] |
| rs1440102 | 1.00[MEX][hapmap] |
| rs1452382 | 1.00[EUR][1000 genomes] |
| rs1452383 | 1.00[AMR][1000 genomes] |
| rs1452384 | 1.00[AMR][1000 genomes] |
| rs1564238 | 1.00[AMR][1000 genomes] |
| rs2218948 | 0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs28391683 | 1.00[EUR][1000 genomes] |
| rs28485441 | 1.00[EUR][1000 genomes] |
| rs28529448 | 1.00[EUR][1000 genomes] |
| rs28628284 | 1.00[EUR][1000 genomes] |
| rs28668116 | 1.00[EUR][1000 genomes] |
| rs28690581 | 1.00[EUR][1000 genomes] |
| rs4494490 | 1.00[EUR][1000 genomes] |
| rs4886407 | 1.00[AMR][1000 genomes] |
| rs4886650 | 1.00[AMR][1000 genomes] |
| rs7162560 | 1.00[EUR][1000 genomes] |
| rs7167874 | 1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs7168985 | 1.00[EUR][1000 genomes] |
| rs7169350 | 1.00[EUR][1000 genomes] |
| rs7175814 | 1.00[EUR][1000 genomes] |
| rs7178358 | 1.00[MEX][hapmap] |
| rs7182126 | 1.00[EUR][1000 genomes] |
| rs7182293 | 1.00[EUR][1000 genomes] |
| rs7182368 | 1.00[AMR][1000 genomes] |
| rs74023579 | 1.00[EUR][1000 genomes] |
| rs744617 | 1.00[MEX][hapmap] |
| rs8027445 | 1.00[MEX][hapmap] |
| rs8031645 | 1.00[AMR][1000 genomes] |
| rs8036034 | 1.00[EUR][1000 genomes] |
| rs8036108 | 1.00[EUR][1000 genomes] |
| rs8037690 | 1.00[EUR][1000 genomes] |
| rs8042459 | 1.00[EUR][1000 genomes] |
| rs896592 | 0.83[AMR][1000 genomes] |
| rs896597 | 0.83[AMR][1000 genomes] |
| rs921537 | 1.00[AMR][1000 genomes] |
| rs921538 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs921540 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1043335 | chr15:74078689-74241186 | Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 17 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:74111000-74114200 | Weak transcription | Fetal Brain Male | brain |
| 2 | chr15:74111000-74119200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
