Variant report

Variant	rs7162560
Chromosome Location	chr15:74192211-74192212
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74191360..74193301-chr15:74195249..74198218,2	MCF-7	breast:
2	chr15:74190385..74192621-chr15:74220750..74222967,2	MCF-7	breast:
3	chr15:74189981..74192337-chr15:74200765..74203588,2	MCF-7	breast:
4	chr15:74185254..74189144-chr15:74189847..74193524,3	K562	blood:
5	chr15:74191166..74196987-chr15:74197125..74201109,6	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12591520	1.00[EUR][1000 genomes]
rs1377061	1.00[EUR][1000 genomes]
rs1452382	1.00[EUR][1000 genomes]
rs2165243	1.00[AMR][1000 genomes]
rs2218948	1.00[EUR][1000 genomes]
rs28391683	1.00[EUR][1000 genomes]
rs28485441	1.00[EUR][1000 genomes]
rs28529448	1.00[EUR][1000 genomes]
rs28628284	1.00[EUR][1000 genomes]
rs28668116	1.00[EUR][1000 genomes]
rs28690581	1.00[EUR][1000 genomes]
rs4494490	1.00[EUR][1000 genomes]
rs7167874	1.00[EUR][1000 genomes]
rs7168985	1.00[EUR][1000 genomes]
rs7169350	1.00[EUR][1000 genomes]
rs7175814	1.00[EUR][1000 genomes]
rs7182126	1.00[EUR][1000 genomes]
rs7182293	1.00[EUR][1000 genomes]
rs74023579	1.00[EUR][1000 genomes]
rs8036034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8036108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037690	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042459	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs921538	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74187200-74192600	Weak transcription	Spleen	Spleen
2	chr15:74188800-74204000	Weak transcription	Right Atrium	heart
3	chr15:74189000-74193200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr15:74189000-74193800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr15:74189200-74193000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr15:74189200-74193200	Enhancers	HSMMtube	muscle
7	chr15:74189400-74193200	Enhancers	NH-A	brain
8	chr15:74190000-74203400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr15:74190600-74192800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr15:74190600-74193000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr15:74190600-74194800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr15:74190800-74192400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr15:74190800-74192400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:74190800-74192400	Weak transcription	Placenta	Placenta
15	chr15:74191400-74192600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:74191400-74192800	Enhancers	Brain Germinal Matrix	brain
17	chr15:74191400-74192800	Enhancers	Stomach Smooth Muscle	stomach
18	chr15:74191400-74193000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr15:74191400-74193000	Enhancers	HSMM	muscle
20	chr15:74191400-74193000	Enhancers	Osteobl	bone
21	chr15:74191600-74192600	Enhancers	Breast Myoepithelial Primary Cells	Breast
22	chr15:74191600-74192600	Enhancers	Fetal Brain Male	brain
23	chr15:74191600-74193000	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr15:74191600-74193000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
25	chr15:74191600-74193400	Enhancers	Fetal Brain Female	brain
26	chr15:74191600-74194600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr15:74191800-74192600	Enhancers	Fetal Muscle Leg	muscle
28	chr15:74191800-74192600	Bivalent Enhancer	Fetal Stomach	stomach
29	chr15:74191800-74193000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr15:74191800-74194400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:74191800-74203600	Weak transcription	Primary T cells from cord blood	blood
32	chr15:74192000-74192400	Enhancers	NHDF-Ad	bronchial
33	chr15:74192200-74192600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr15:74192200-74192600	Bivalent Enhancer	NHEK	skin
35	chr15:74192200-74203400	Weak transcription	Aorta	Aorta

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