Variant report

Variant	rs28690581
Chromosome Location	chr15:74151776-74151777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12591520	1.00[EUR][1000 genomes]
rs1377061	1.00[EUR][1000 genomes]
rs1452382	1.00[EUR][1000 genomes]
rs2218948	1.00[EUR][1000 genomes]
rs28391683	1.00[EUR][1000 genomes]
rs28485441	1.00[EUR][1000 genomes]
rs28529448	1.00[EUR][1000 genomes]
rs28579067	0.97[AFR][1000 genomes]
rs28628284	1.00[EUR][1000 genomes]
rs28668116	1.00[EUR][1000 genomes]
rs4494490	1.00[EUR][1000 genomes]
rs7162560	1.00[EUR][1000 genomes]
rs7167874	1.00[EUR][1000 genomes]
rs7168985	1.00[EUR][1000 genomes]
rs7169350	1.00[EUR][1000 genomes]
rs7175814	1.00[EUR][1000 genomes]
rs7182126	1.00[EUR][1000 genomes]
rs7182293	1.00[EUR][1000 genomes]
rs74023579	1.00[EUR][1000 genomes]
rs8036034	1.00[EUR][1000 genomes]
rs8036108	1.00[EUR][1000 genomes]
rs8037690	1.00[EUR][1000 genomes]
rs8042459	1.00[EUR][1000 genomes]
rs921538	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74149400-74154400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr15:74149400-74154600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr15:74149600-74154400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:74149600-74158600	Weak transcription	Right Atrium	heart
5	chr15:74151200-74152000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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