Variant report

Variant	rs8042459
Chromosome Location	chr15:74205868-74205869
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74201015..74203312-chr15:74205773..74208210,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10519048	1.00[EUR][1000 genomes]
rs12591520	1.00[EUR][1000 genomes]
rs1377061	1.00[EUR][1000 genomes]
rs1452382	1.00[EUR][1000 genomes]
rs2165243	1.00[AMR][1000 genomes]
rs2218948	1.00[EUR][1000 genomes]
rs28391683	1.00[EUR][1000 genomes]
rs28485441	1.00[EUR][1000 genomes]
rs28529448	1.00[EUR][1000 genomes]
rs28628284	1.00[EUR][1000 genomes]
rs28668116	1.00[EUR][1000 genomes]
rs28690581	1.00[EUR][1000 genomes]
rs4494490	1.00[EUR][1000 genomes]
rs7162560	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7167874	1.00[EUR][1000 genomes]
rs7168985	1.00[EUR][1000 genomes]
rs7169350	1.00[EUR][1000 genomes]
rs7175814	1.00[EUR][1000 genomes]
rs7182126	1.00[EUR][1000 genomes]
rs7182293	1.00[EUR][1000 genomes]
rs74023444	1.00[EUR][1000 genomes]
rs74023579	1.00[EUR][1000 genomes]
rs8036034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8036108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037690	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs921538	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74192600-74207400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr15:74192600-74214000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr15:74195800-74210200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:74197000-74208600	Weak transcription	Thymus	Thymus
5	chr15:74198200-74206600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr15:74198200-74215200	Weak transcription	Pancreas	Pancrea
7	chr15:74199200-74216200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr15:74199600-74208600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr15:74199800-74208600	Weak transcription	NHLF	lung
10	chr15:74199800-74211200	Weak transcription	NH-A	brain
11	chr15:74199800-74211400	Weak transcription	Osteobl	bone
12	chr15:74199800-74213800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:74200000-74208200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr15:74200000-74210200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr15:74200400-74208600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr15:74200600-74208600	Weak transcription	HSMM	muscle
17	chr15:74200600-74212200	Weak transcription	Fetal Heart	heart
18	chr15:74200800-74210200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr15:74200800-74210400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr15:74200800-74210400	Weak transcription	NHDF-Ad	bronchial
21	chr15:74201000-74210400	Weak transcription	Stomach Smooth Muscle	stomach
22	chr15:74201200-74211000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr15:74202800-74210400	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr15:74203200-74206600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:74203600-74210400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:74203600-74213800	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr15:74204000-74214000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr15:74204400-74206000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
29	chr15:74204400-74206400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:74204400-74206600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:74204400-74206600	Weak transcription	Gastric	stomach
32	chr15:74204400-74206600	Weak transcription	Left Ventricle	heart
33	chr15:74204400-74206600	Weak transcription	Stomach Mucosa	stomach
34	chr15:74204400-74208000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr15:74204400-74208200	Weak transcription	Primary T cells from cord blood	blood
36	chr15:74204400-74211400	Weak transcription	Fetal Stomach	stomach
37	chr15:74204400-74212000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr15:74204400-74212000	Weak transcription	Aorta	Aorta
39	chr15:74205000-74206600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr15:74205200-74206000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr15:74205400-74207000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:74205800-74206200	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr15:74205800-74207000	Enhancers	Primary hematopoietic stem cells	blood
44	chr15:74205800-74207000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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