Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:74193692..74196686-chr15:74219643..74222276,3	MCF-7	breast:
2	chr15:74195464..74196997-chr15:74210408..74212353,2	MCF-7	breast:
3	chr15:74191360..74193301-chr15:74195249..74198218,2	MCF-7	breast:
4	chr15:74191166..74196987-chr15:74197125..74201109,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261801	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12591520	1.00[EUR][1000 genomes]
rs1377061	1.00[EUR][1000 genomes]
rs1452382	1.00[EUR][1000 genomes]
rs2165243	1.00[AMR][1000 genomes]
rs2218948	1.00[EUR][1000 genomes]
rs28391683	1.00[EUR][1000 genomes]
rs28485441	1.00[EUR][1000 genomes]
rs28529448	1.00[EUR][1000 genomes]
rs28628284	1.00[EUR][1000 genomes]
rs28668116	1.00[EUR][1000 genomes]
rs28690581	1.00[EUR][1000 genomes]
rs4494490	1.00[EUR][1000 genomes]
rs7162560	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7167874	1.00[EUR][1000 genomes]
rs7168985	1.00[EUR][1000 genomes]
rs7169350	1.00[EUR][1000 genomes]
rs7175814	1.00[EUR][1000 genomes]
rs7182126	1.00[EUR][1000 genomes]
rs7182293	1.00[EUR][1000 genomes]
rs74023579	1.00[EUR][1000 genomes]
rs8036034	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8036108	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042459	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs921538	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74188800-74204000	Weak transcription	Right Atrium	heart
2	chr15:74190000-74203400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:74191800-74203600	Weak transcription	Primary T cells from cord blood	blood
4	chr15:74192200-74203400	Weak transcription	Aorta	Aorta
5	chr15:74192600-74196800	Weak transcription	Fetal Brain Male	brain
6	chr15:74192600-74207400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr15:74192600-74214000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr15:74193000-74198800	Weak transcription	HSMM	muscle
9	chr15:74193200-74198600	Weak transcription	HSMMtube	muscle
10	chr15:74193400-74200600	Weak transcription	Fetal Brain Female	brain
11	chr15:74195200-74198000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:74195400-74203000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr15:74195600-74198600	Weak transcription	NHDF-Ad	bronchial
14	chr15:74195600-74199000	Weak transcription	Primary hematopoietic stem cells	blood
15	chr15:74195800-74198400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr15:74195800-74210200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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