Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74172793..74174879-chr15:74209717..74212670,2	MCF-7	breast:
2	chr15:74160251..74162988-chr15:74171471..74174133,2	K562	blood:

Variant related genes	Relation type
ENSG00000261801	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12591520	1.00[EUR][1000 genomes]
rs1377061	1.00[EUR][1000 genomes]
rs1452382	1.00[EUR][1000 genomes]
rs2165243	1.00[AMR][1000 genomes]
rs2218948	1.00[EUR][1000 genomes]
rs28391683	1.00[EUR][1000 genomes]
rs28485441	1.00[EUR][1000 genomes]
rs28529448	1.00[EUR][1000 genomes]
rs28628284	1.00[EUR][1000 genomes]
rs28668116	1.00[EUR][1000 genomes]
rs28690581	1.00[EUR][1000 genomes]
rs4494490	1.00[EUR][1000 genomes]
rs7162560	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7167874	0.83[YRI][hapmap];1.00[EUR][1000 genomes]
rs7168985	1.00[EUR][1000 genomes]
rs7169350	1.00[EUR][1000 genomes]
rs7175814	1.00[EUR][1000 genomes]
rs7182126	1.00[EUR][1000 genomes]
rs7182293	1.00[EUR][1000 genomes]
rs74023579	1.00[EUR][1000 genomes]
rs8036034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8037690	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8042459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs921538	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74169200-74174200	Weak transcription	Fetal Intestine Large	intestine
2	chr15:74170400-74175200	Weak transcription	Fetal Intestine Small	intestine
3	chr15:74173000-74174200	Weak transcription	Duodenum Mucosa	Duodenum

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