Variant report

Variant	rs2165243
Chromosome Location	chr15:74306704-74306705
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74286453..74288589-chr15:74305603..74307209,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067221	Chromatin interaction
ENSG00000140464	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs7162560	1.00[AMR][1000 genomes]
rs8036034	1.00[AMR][1000 genomes]
rs8036108	1.00[AMR][1000 genomes]
rs8037690	1.00[AMR][1000 genomes]
rs8042459	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv518316	chr15:74290993-74331083	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv469619	chr15:74291859-74466321	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv482362	chr15:74291859-74466321	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74288200-74331000	Weak transcription	Fetal Heart	heart
2	chr15:74289800-74331000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr15:74290000-74314800	Weak transcription	Brain Cingulate Gyrus	brain
4	chr15:74291000-74311200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr15:74291000-74314800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:74291000-74315000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr15:74291000-74315200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:74291800-74314800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:74292000-74315200	Weak transcription	Fetal Brain Female	brain
10	chr15:74292000-74329200	Weak transcription	Fetal Brain Male	brain
11	chr15:74296600-74315200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr15:74296800-74315200	Weak transcription	Brain Germinal Matrix	brain
13	chr15:74297000-74315200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr15:74297000-74315600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:74298200-74311200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr15:74299200-74315400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr15:74299400-74315400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:74299600-74308200	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr15:74300000-74314800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr15:74300400-74307000	Weak transcription	HSMMtube	muscle
21	chr15:74300400-74315800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr15:74300600-74307600	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr15:74300600-74307800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:74300600-74315200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:74300800-74315200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr15:74300800-74315200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:74300800-74315200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:74300800-74326000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr15:74302400-74312800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr15:74302400-74331000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr15:74303600-74331600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr15:74303800-74307200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
33	chr15:74303800-74315000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
34	chr15:74304000-74307800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr15:74304000-74314800	Weak transcription	Brain Hippocampus Middle	brain
36	chr15:74304000-74314800	Weak transcription	NH-A	brain
37	chr15:74304000-74315200	Weak transcription	Brain Anterior Caudate	brain
38	chr15:74304000-74315200	Weak transcription	Brain Substantia Nigra	brain
39	chr15:74304000-74315200	Weak transcription	Psoas Muscle	Psoas
40	chr15:74304000-74326000	Weak transcription	Fetal Kidney	kidney
41	chr15:74304200-74306800	Weak transcription	Esophagus	oesophagus
42	chr15:74304200-74307000	Weak transcription	Aorta	Aorta
43	chr15:74304200-74307200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr15:74304200-74307200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:74304200-74307200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr15:74304200-74307200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr15:74304200-74311200	Weak transcription	K562	blood
48	chr15:74304200-74311200	Weak transcription	NHDF-Ad	bronchial
49	chr15:74304200-74314400	Weak transcription	Dnd41	blood
50	chr15:74304200-74314600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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