Variant report

Variant	rs1564238
Chromosome Location	chr15:74109846-74109847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12591520	1.00[AMR][1000 genomes]
rs12902228	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1377061	1.00[AMR][1000 genomes]
rs1452383	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1452384	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2218948	1.00[AMR][1000 genomes]
rs4886407	1.00[AMR][1000 genomes]
rs4886650	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7182368	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8031645	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs896592	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs896597	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs921537	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs921538	1.00[AMR][1000 genomes]
rs921540	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74097800-74110200	Weak transcription	Brain Germinal Matrix	brain
2	chr15:74106200-74110200	Weak transcription	Fetal Brain Female	brain
3	chr15:74107000-74110400	Weak transcription	Fetal Brain Male	brain
4	chr15:74109400-74111600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr15:74109600-74111600	Enhancers	Fetal Muscle Leg	muscle
6	chr15:74109800-74111000	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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