Variant report

Variant	rs12902228
Chromosome Location	chr15:74097694-74097695
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74087708..74090506-chr15:74096468..74098729,2	MCF-7	breast:
2	chr15:74096413..74099919-chr15:74101380..74103863,3	K562	blood:
3	chr15:74090242..74092126-chr15:74095844..74097744,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12591520	1.00[AMR][1000 genomes]
rs1377061	1.00[AMR][1000 genomes]
rs1452378	0.88[YRI][hapmap];0.83[AFR][1000 genomes]
rs1452383	1.00[AMR][1000 genomes]
rs1452384	1.00[AMR][1000 genomes]
rs1564238	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2218948	1.00[AMR][1000 genomes]
rs4886407	0.81[YRI][hapmap];1.00[AMR][1000 genomes]
rs4886650	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7182368	1.00[AMR][1000 genomes]
rs8031645	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs896592	0.83[AMR][1000 genomes]
rs896597	0.83[AMR][1000 genomes]
rs921537	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs921538	1.00[AMR][1000 genomes]
rs921540	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74088200-74100200	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr15:74089600-74101800	Weak transcription	Spleen	Spleen
3	chr15:74091400-74097800	Enhancers	Fetal Muscle Leg	muscle
4	chr15:74091600-74097800	Enhancers	Fetal Lung	lung
5	chr15:74091800-74097800	Enhancers	Brain Germinal Matrix	brain
6	chr15:74092000-74099400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr15:74092400-74098400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
8	chr15:74092600-74099200	Enhancers	Fetal Brain Female	brain
9	chr15:74092800-74099600	Enhancers	Fetal Brain Male	brain
10	chr15:74093600-74099200	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr15:74094600-74097800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
12	chr15:74095400-74097800	Enhancers	Brain Anterior Caudate	brain
13	chr15:74095800-74098000	Enhancers	Brain Cingulate Gyrus	brain
14	chr15:74096400-74097800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:74096400-74099400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:74096400-74103000	Weak transcription	Right Ventricle	heart
17	chr15:74096600-74098600	Enhancers	HepG2	liver
18	chr15:74096600-74101600	Weak transcription	Right Atrium	heart
19	chr15:74096600-74101800	Weak transcription	Left Ventricle	heart
20	chr15:74096600-74102200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr15:74097000-74097800	Enhancers	Brain Hippocampus Middle	brain
22	chr15:74097000-74098000	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr15:74097000-74098200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr15:74097200-74097800	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr15:74097200-74098000	Enhancers	Pancreatic Islets	Pancreatic Islet
26	chr15:74097400-74097800	Enhancers	Brain Angular Gyrus	brain
27	chr15:74097400-74099200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr15:74097400-74100000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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